Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_451 and HP15_452 overlap by 1 nucleotides HP15_452 and HP15_453 are separated by 264 nucleotides HP15_453 and HP15_454 are separated by 61 nucleotides HP15_454 and HP15_455 overlap by 1 nucleotides
HP15_451: HP15_451 - type I secretion outer membrane protein, TolC family, at 455,798 to 457,180
_451
HP15_452: HP15_452 - hypothetical protein, at 457,180 to 457,290
_452
HP15_453: HP15_453 - thiamine biosynthesis protein thiC, at 457,555 to 459,450
_453
HP15_454: HP15_454 - nucleoside diphosphate pyrophosphatase, at 459,512 to 460,129
_454
HP15_455: HP15_455 - protein containing DUF1249, at 460,129 to 460,614
_455
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 457.312 kb on + strand at 457.312 kb on + strand at 457.474 kb on + strand at 457.673 kb on + strand at 457.798 kb on + strand, within HP15_453 at 457.962 kb on - strand, within HP15_453 at 458.008 kb on + strand, within HP15_453 at 458.175 kb on - strand, within HP15_453 at 458.340 kb on + strand, within HP15_453 at 458.470 kb on + strand, within HP15_453 at 458.470 kb on + strand, within HP15_453 at 458.765 kb on - strand, within HP15_453 at 458.927 kb on + strand, within HP15_453 at 459.601 kb on - strand, within HP15_454 at 459.606 kb on - strand, within HP15_454 at 459.649 kb on - strand, within HP15_454 at 459.678 kb on + strand, within HP15_454 at 459.678 kb on + strand, within HP15_454 at 459.681 kb on + strand, within HP15_454 at 459.711 kb on + strand, within HP15_454 at 459.714 kb on - strand, within HP15_454 at 459.719 kb on - strand, within HP15_454 at 459.738 kb on - strand, within HP15_454 at 459.738 kb on - strand, within HP15_454 at 459.751 kb on - strand, within HP15_454 at 459.802 kb on - strand, within HP15_454 at 459.855 kb on - strand, within HP15_454 at 459.933 kb on - strand, within HP15_454 at 459.991 kb on + strand, within HP15_454 at 460.084 kb on - strand at 460.086 kb on + strand at 460.179 kb on + strand, within HP15_455 at 460.187 kb on - strand, within HP15_455
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 457,312 + +0.3 457,312 + -2.0 457,474 + -4.7 457,673 + -3.6 457,798 + HP15_453 0.13 -2.6 457,962 - HP15_453 0.21 -0.9 458,008 + HP15_453 0.24 -1.9 458,175 - HP15_453 0.33 -2.0 458,340 + HP15_453 0.41 -3.0 458,470 + HP15_453 0.48 -2.4 458,470 + HP15_453 0.48 -4.1 458,765 - HP15_453 0.64 -2.1 458,927 + HP15_453 0.72 -4.2 459,601 - HP15_454 0.14 -0.3 459,606 - HP15_454 0.15 +0.5 459,649 - HP15_454 0.22 -0.2 459,678 + HP15_454 0.27 +0.0 459,678 + HP15_454 0.27 -0.1 459,681 + HP15_454 0.27 -1.1 459,711 + HP15_454 0.32 -0.9 459,714 - HP15_454 0.33 -0.3 459,719 - HP15_454 0.33 -0.1 459,738 - HP15_454 0.37 -2.1 459,738 - HP15_454 0.37 -2.0 459,751 - HP15_454 0.39 -0.3 459,802 - HP15_454 0.47 +0.2 459,855 - HP15_454 0.56 +1.4 459,933 - HP15_454 0.68 -0.8 459,991 + HP15_454 0.78 -0.3 460,084 - +0.4 460,086 + +0.0 460,179 + HP15_455 0.10 +1.0 460,187 - HP15_455 0.12 +0.1
Or see this region's nucleotide sequence