Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g101

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g99 and HP15_p187g100 are separated by 172 nucleotidesHP15_p187g100 and HP15_p187g101 overlap by 4 nucleotidesHP15_p187g101 and HP15_p187g102 are separated by 42 nucleotides HP15_p187g99: HP15_p187g99 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 93,034 to 94,338 _p187g99 HP15_p187g100: HP15_p187g100 - RNA polymerase sigma factor, at 94,511 to 95,080 _p187g100 HP15_p187g101: HP15_p187g101 - conserved hypothetical protein, at 95,077 to 95,805 _p187g101 HP15_p187g102: HP15_p187g102 - serine-rich repeat containing protein, at 95,848 to 98,010 _p187g102 Position (kb) 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 94.120 kb on + strand, within HP15_p187g99at 94.133 kb on - strand, within HP15_p187g99at 94.135 kb on - strand, within HP15_p187g99at 94.135 kb on - strand, within HP15_p187g99at 94.142 kb on + strand, within HP15_p187g99at 94.169 kb on - strand, within HP15_p187g99at 94.171 kb on - strand, within HP15_p187g99at 94.174 kb on + strand, within HP15_p187g99at 94.182 kb on - strand, within HP15_p187g99at 94.182 kb on - strand, within HP15_p187g99at 94.231 kb on + strandat 94.239 kb on - strandat 94.245 kb on - strandat 94.247 kb on + strandat 94.317 kb on + strandat 94.325 kb on - strandat 94.325 kb on - strandat 94.325 kb on - strandat 94.365 kb on - strandat 94.416 kb on + strandat 94.456 kb on - strandat 94.497 kb on + strandat 94.558 kb on + strandat 94.559 kb on + strandat 94.582 kb on + strand, within HP15_p187g100at 94.603 kb on + strand, within HP15_p187g100at 94.611 kb on - strand, within HP15_p187g100at 94.656 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.676 kb on - strand, within HP15_p187g100at 94.676 kb on - strand, within HP15_p187g100at 94.717 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.727 kb on - strand, within HP15_p187g100at 94.727 kb on - strand, within HP15_p187g100at 94.753 kb on + strand, within HP15_p187g100at 94.769 kb on - strand, within HP15_p187g100at 94.784 kb on + strand, within HP15_p187g100at 94.792 kb on - strand, within HP15_p187g100at 94.835 kb on + strand, within HP15_p187g100at 94.841 kb on + strand, within HP15_p187g100at 94.849 kb on - strand, within HP15_p187g100at 94.863 kb on - strand, within HP15_p187g100at 94.894 kb on - strand, within HP15_p187g100at 94.934 kb on + strand, within HP15_p187g100at 94.944 kb on + strand, within HP15_p187g100at 94.975 kb on + strand, within HP15_p187g100at 94.983 kb on + strand, within HP15_p187g100at 94.983 kb on + strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 95.015 kb on + strand, within HP15_p187g100at 95.020 kb on + strand, within HP15_p187g100at 95.049 kb on + strandat 95.057 kb on - strandat 95.057 kb on - strandat 95.057 kb on - strandat 95.115 kb on + strandat 95.116 kb on + strandat 95.121 kb on + strandat 95.121 kb on + strandat 95.129 kb on + strandat 95.140 kb on + strandat 95.142 kb on + strandat 95.148 kb on - strandat 95.148 kb on - strandat 95.150 kb on - strand, within HP15_p187g101at 95.186 kb on + strand, within HP15_p187g101at 95.236 kb on + strand, within HP15_p187g101at 95.246 kb on + strand, within HP15_p187g101at 95.277 kb on - strand, within HP15_p187g101at 95.317 kb on + strand, within HP15_p187g101at 95.334 kb on - strand, within HP15_p187g101at 95.334 kb on - strand, within HP15_p187g101at 95.363 kb on - strand, within HP15_p187g101at 95.382 kb on + strand, within HP15_p187g101at 95.436 kb on - strand, within HP15_p187g101at 95.492 kb on + strand, within HP15_p187g101at 95.501 kb on - strand, within HP15_p187g101at 95.512 kb on + strand, within HP15_p187g101at 95.586 kb on - strand, within HP15_p187g101at 95.691 kb on - strand, within HP15_p187g101at 95.691 kb on - strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.701 kb on - strand, within HP15_p187g101at 95.731 kb on - strand, within HP15_p187g101at 95.793 kb on - strandat 95.865 kb on + strandat 95.873 kb on - strandat 95.873 kb on - strandat 95.916 kb on + strandat 95.958 kb on - strandat 95.965 kb on + strandat 96.013 kb on + strandat 96.042 kb on - strandat 96.047 kb on + strandat 96.067 kb on + strand, within HP15_p187g102at 96.076 kb on - strand, within HP15_p187g102at 96.077 kb on + strand, within HP15_p187g102at 96.112 kb on - strand, within HP15_p187g102at 96.122 kb on - strand, within HP15_p187g102at 96.122 kb on - strand, within HP15_p187g102at 96.152 kb on + strand, within HP15_p187g102at 96.152 kb on + strand, within HP15_p187g102at 96.152 kb on + strand, within HP15_p187g102at 96.159 kb on + strand, within HP15_p187g102at 96.160 kb on - strand, within HP15_p187g102at 96.160 kb on - strand, within HP15_p187g102at 96.187 kb on - strand, within HP15_p187g102at 96.316 kb on + strand, within HP15_p187g102at 96.316 kb on + strand, within HP15_p187g102at 96.321 kb on + strand, within HP15_p187g102at 96.329 kb on - strand, within HP15_p187g102at 96.331 kb on - strand, within HP15_p187g102at 96.333 kb on + strand, within HP15_p187g102at 96.361 kb on + strand, within HP15_p187g102at 96.369 kb on + strand, within HP15_p187g102at 96.385 kb on - strand, within HP15_p187g102at 96.412 kb on - strand, within HP15_p187g102at 96.419 kb on - strand, within HP15_p187g102at 96.497 kb on - strand, within HP15_p187g102at 96.497 kb on - strand, within HP15_p187g102at 96.503 kb on + strand, within HP15_p187g102at 96.513 kb on + strand, within HP15_p187g102at 96.513 kb on + strand, within HP15_p187g102at 96.521 kb on - strand, within HP15_p187g102at 96.527 kb on + strand, within HP15_p187g102at 96.554 kb on - strand, within HP15_p187g102at 96.625 kb on + strand, within HP15_p187g102at 96.635 kb on + strand, within HP15_p187g102at 96.637 kb on + strand, within HP15_p187g102at 96.643 kb on - strand, within HP15_p187g102at 96.665 kb on + strand, within HP15_p187g102at 96.665 kb on + strand, within HP15_p187g102at 96.670 kb on + strand, within HP15_p187g102at 96.670 kb on + strand, within HP15_p187g102at 96.673 kb on - strand, within HP15_p187g102at 96.673 kb on - strand, within HP15_p187g102at 96.673 kb on - strand, within HP15_p187g102at 96.678 kb on - strand, within HP15_p187g102at 96.710 kb on - strand, within HP15_p187g102at 96.732 kb on + strand, within HP15_p187g102at 96.741 kb on + strand, within HP15_p187g102at 96.758 kb on + strand, within HP15_p187g102at 96.766 kb on - strand, within HP15_p187g102at 96.770 kb on + strand, within HP15_p187g102at 96.777 kb on + strand, within HP15_p187g102at 96.789 kb on + strand, within HP15_p187g102at 96.797 kb on - strand, within HP15_p187g102

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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94,120 + HP15_p187g99 0.83 -0.2
94,133 - HP15_p187g99 0.84 -0.2
94,135 - HP15_p187g99 0.84 +0.3
94,135 - HP15_p187g99 0.84 +0.4
94,142 + HP15_p187g99 0.85 +0.5
94,169 - HP15_p187g99 0.87 +0.0
94,171 - HP15_p187g99 0.87 -0.2
94,174 + HP15_p187g99 0.87 +0.5
94,182 - HP15_p187g99 0.88 +1.2
94,182 - HP15_p187g99 0.88 +0.3
94,231 + +0.2
94,239 - -0.5
94,245 - -0.7
94,247 + +1.1
94,317 + +0.2
94,325 - +0.4
94,325 - +0.1
94,325 - +1.4
94,365 - +0.4
94,416 + +0.4
94,456 - -0.2
94,497 + -0.4
94,558 + +0.1
94,559 + -0.0
94,582 + HP15_p187g100 0.12 -0.3
94,603 + HP15_p187g100 0.16 +0.6
94,611 - HP15_p187g100 0.18 +0.4
94,656 + HP15_p187g100 0.25 -0.0
94,668 + HP15_p187g100 0.28 -1.4
94,668 + HP15_p187g100 0.28 +0.7
94,668 + HP15_p187g100 0.28 +1.5
94,676 - HP15_p187g100 0.29 +1.0
94,676 - HP15_p187g100 0.29 +0.6
94,717 + HP15_p187g100 0.36 -0.9
94,719 + HP15_p187g100 0.36 -0.9
94,719 + HP15_p187g100 0.36 +0.3
94,719 + HP15_p187g100 0.36 +1.1
94,719 + HP15_p187g100 0.36 -0.1
94,719 + HP15_p187g100 0.36 +0.6
94,727 - HP15_p187g100 0.38 -1.3
94,727 - HP15_p187g100 0.38 -0.3
94,753 + HP15_p187g100 0.42 -0.5
94,769 - HP15_p187g100 0.45 +0.4
94,784 + HP15_p187g100 0.48 +0.7
94,792 - HP15_p187g100 0.49 -1.5
94,835 + HP15_p187g100 0.57 +0.7
94,841 + HP15_p187g100 0.58 +0.7
94,849 - HP15_p187g100 0.59 -0.7
94,863 - HP15_p187g100 0.62 +0.7
94,894 - HP15_p187g100 0.67 -1.8
94,934 + HP15_p187g100 0.74 +0.7
94,944 + HP15_p187g100 0.76 +0.3
94,975 + HP15_p187g100 0.81 +0.0
94,983 + HP15_p187g100 0.83 -0.1
94,983 + HP15_p187g100 0.83 -0.7
94,991 - HP15_p187g100 0.84 -0.6
94,991 - HP15_p187g100 0.84 +0.3
94,991 - HP15_p187g100 0.84 +0.1
94,991 - HP15_p187g100 0.84 -0.9
94,991 - HP15_p187g100 0.84 -0.3
94,991 - HP15_p187g100 0.84 -0.2
94,991 - HP15_p187g100 0.84 -1.6
95,015 + HP15_p187g100 0.88 -0.7
95,020 + HP15_p187g100 0.89 +0.1
95,049 + -0.1
95,057 - -0.2
95,057 - +0.7
95,057 - -0.3
95,115 + +0.4
95,116 + +0.2
95,121 + +0.4
95,121 + +4.2
95,129 + +0.0
95,140 + +1.1
95,142 + -0.4
95,148 - -1.6
95,148 - +0.6
95,150 - HP15_p187g101 0.10 -1.0
95,186 + HP15_p187g101 0.15 -0.4
95,236 + HP15_p187g101 0.22 +0.2
95,246 + HP15_p187g101 0.23 -1.5
95,277 - HP15_p187g101 0.27 +0.8
95,317 + HP15_p187g101 0.33 +0.1
95,334 - HP15_p187g101 0.35 -0.3
95,334 - HP15_p187g101 0.35 +0.1
95,363 - HP15_p187g101 0.39 +0.1
95,382 + HP15_p187g101 0.42 -0.4
95,436 - HP15_p187g101 0.49 -1.4
95,492 + HP15_p187g101 0.57 -0.5
95,501 - HP15_p187g101 0.58 +0.1
95,512 + HP15_p187g101 0.60 -1.0
95,586 - HP15_p187g101 0.70 -1.7
95,691 - HP15_p187g101 0.84 +0.4
95,691 - HP15_p187g101 0.84 -0.4
95,693 + HP15_p187g101 0.84 -0.7
95,693 + HP15_p187g101 0.84 +0.2
95,693 + HP15_p187g101 0.84 +0.8
95,693 + HP15_p187g101 0.84 -0.6
95,701 - HP15_p187g101 0.86 -1.7
95,731 - HP15_p187g101 0.90 +0.1
95,793 - +0.6
95,865 + -0.9
95,873 - +0.1
95,873 - +0.3
95,916 + +0.6
95,958 - -1.7
95,965 + -0.9
96,013 + +0.4
96,042 - -2.4
96,047 + -1.7
96,067 + HP15_p187g102 0.10 +0.8
96,076 - HP15_p187g102 0.11 +0.1
96,077 + HP15_p187g102 0.11 +0.3
96,112 - HP15_p187g102 0.12 -2.0
96,122 - HP15_p187g102 0.13 -0.1
96,122 - HP15_p187g102 0.13 +0.7
96,152 + HP15_p187g102 0.14 +0.4
96,152 + HP15_p187g102 0.14 -0.2
96,152 + HP15_p187g102 0.14 +0.3
96,159 + HP15_p187g102 0.14 +0.2
96,160 - HP15_p187g102 0.14 +0.5
96,160 - HP15_p187g102 0.14 -0.2
96,187 - HP15_p187g102 0.16 +0.7
96,316 + HP15_p187g102 0.22 +0.6
96,316 + HP15_p187g102 0.22 -0.5
96,321 + HP15_p187g102 0.22 -0.2
96,329 - HP15_p187g102 0.22 -2.9
96,331 - HP15_p187g102 0.22 +0.2
96,333 + HP15_p187g102 0.22 +0.0
96,361 + HP15_p187g102 0.24 +0.6
96,369 + HP15_p187g102 0.24 -0.1
96,385 - HP15_p187g102 0.25 -0.7
96,412 - HP15_p187g102 0.26 -0.3
96,419 - HP15_p187g102 0.26 +0.6
96,497 - HP15_p187g102 0.30 +0.4
96,497 - HP15_p187g102 0.30 +0.7
96,503 + HP15_p187g102 0.30 +0.3
96,513 + HP15_p187g102 0.31 -0.5
96,513 + HP15_p187g102 0.31 +0.5
96,521 - HP15_p187g102 0.31 +0.5
96,527 + HP15_p187g102 0.31 -0.1
96,554 - HP15_p187g102 0.33 -0.2
96,625 + HP15_p187g102 0.36 -0.4
96,635 + HP15_p187g102 0.36 +0.3
96,637 + HP15_p187g102 0.36 +0.2
96,643 - HP15_p187g102 0.37 +0.1
96,665 + HP15_p187g102 0.38 -0.3
96,665 + HP15_p187g102 0.38 +1.5
96,670 + HP15_p187g102 0.38 +0.3
96,670 + HP15_p187g102 0.38 +0.9
96,673 - HP15_p187g102 0.38 -0.1
96,673 - HP15_p187g102 0.38 +0.8
96,673 - HP15_p187g102 0.38 +0.2
96,678 - HP15_p187g102 0.38 +0.4
96,710 - HP15_p187g102 0.40 -0.9
96,732 + HP15_p187g102 0.41 -1.0
96,741 + HP15_p187g102 0.41 -0.0
96,758 + HP15_p187g102 0.42 -1.1
96,766 - HP15_p187g102 0.42 +2.0
96,770 + HP15_p187g102 0.43 -0.2
96,777 + HP15_p187g102 0.43 -0.4
96,789 + HP15_p187g102 0.44 +0.6
96,797 - HP15_p187g102 0.44 -0.3

Or see this region's nucleotide sequence