Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g100

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g99 and HP15_p187g100 are separated by 172 nucleotidesHP15_p187g100 and HP15_p187g101 overlap by 4 nucleotidesHP15_p187g101 and HP15_p187g102 are separated by 42 nucleotides HP15_p187g99: HP15_p187g99 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 93,034 to 94,338 _p187g99 HP15_p187g100: HP15_p187g100 - RNA polymerase sigma factor, at 94,511 to 95,080 _p187g100 HP15_p187g101: HP15_p187g101 - conserved hypothetical protein, at 95,077 to 95,805 _p187g101 HP15_p187g102: HP15_p187g102 - serine-rich repeat containing protein, at 95,848 to 98,010 _p187g102 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 93.530 kb on - strand, within HP15_p187g99at 93.712 kb on + strand, within HP15_p187g99at 93.720 kb on - strand, within HP15_p187g99at 93.752 kb on - strand, within HP15_p187g99at 93.792 kb on - strand, within HP15_p187g99at 93.792 kb on - strand, within HP15_p187g99at 93.801 kb on + strand, within HP15_p187g99at 93.801 kb on + strand, within HP15_p187g99at 93.801 kb on + strand, within HP15_p187g99at 93.809 kb on - strand, within HP15_p187g99at 93.809 kb on - strand, within HP15_p187g99at 93.814 kb on - strand, within HP15_p187g99at 93.816 kb on + strand, within HP15_p187g99at 93.824 kb on + strand, within HP15_p187g99at 93.824 kb on + strand, within HP15_p187g99at 93.824 kb on + strand, within HP15_p187g99at 93.832 kb on - strand, within HP15_p187g99at 93.832 kb on - strand, within HP15_p187g99at 93.832 kb on - strand, within HP15_p187g99at 93.837 kb on - strand, within HP15_p187g99at 93.852 kb on + strand, within HP15_p187g99at 93.869 kb on + strand, within HP15_p187g99at 93.870 kb on - strand, within HP15_p187g99at 93.890 kb on + strand, within HP15_p187g99at 93.935 kb on - strand, within HP15_p187g99at 93.945 kb on + strand, within HP15_p187g99at 93.959 kb on + strand, within HP15_p187g99at 93.965 kb on + strand, within HP15_p187g99at 93.972 kb on - strand, within HP15_p187g99at 93.973 kb on - strand, within HP15_p187g99at 94.007 kb on - strand, within HP15_p187g99at 94.009 kb on - strand, within HP15_p187g99at 94.013 kb on + strand, within HP15_p187g99at 94.021 kb on - strand, within HP15_p187g99at 94.038 kb on - strand, within HP15_p187g99at 94.120 kb on + strand, within HP15_p187g99at 94.133 kb on - strand, within HP15_p187g99at 94.135 kb on - strand, within HP15_p187g99at 94.135 kb on - strand, within HP15_p187g99at 94.142 kb on + strand, within HP15_p187g99at 94.169 kb on - strand, within HP15_p187g99at 94.171 kb on - strand, within HP15_p187g99at 94.174 kb on + strand, within HP15_p187g99at 94.182 kb on - strand, within HP15_p187g99at 94.182 kb on - strand, within HP15_p187g99at 94.231 kb on + strandat 94.239 kb on - strandat 94.245 kb on - strandat 94.247 kb on + strandat 94.317 kb on + strandat 94.325 kb on - strandat 94.325 kb on - strandat 94.325 kb on - strandat 94.365 kb on - strandat 94.416 kb on + strandat 94.456 kb on - strandat 94.497 kb on + strandat 94.558 kb on + strandat 94.559 kb on + strandat 94.582 kb on + strand, within HP15_p187g100at 94.603 kb on + strand, within HP15_p187g100at 94.611 kb on - strand, within HP15_p187g100at 94.656 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.668 kb on + strand, within HP15_p187g100at 94.676 kb on - strand, within HP15_p187g100at 94.676 kb on - strand, within HP15_p187g100at 94.717 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.719 kb on + strand, within HP15_p187g100at 94.727 kb on - strand, within HP15_p187g100at 94.727 kb on - strand, within HP15_p187g100at 94.753 kb on + strand, within HP15_p187g100at 94.769 kb on - strand, within HP15_p187g100at 94.784 kb on + strand, within HP15_p187g100at 94.792 kb on - strand, within HP15_p187g100at 94.835 kb on + strand, within HP15_p187g100at 94.841 kb on + strand, within HP15_p187g100at 94.849 kb on - strand, within HP15_p187g100at 94.863 kb on - strand, within HP15_p187g100at 94.894 kb on - strand, within HP15_p187g100at 94.934 kb on + strand, within HP15_p187g100at 94.944 kb on + strand, within HP15_p187g100at 94.975 kb on + strand, within HP15_p187g100at 94.983 kb on + strand, within HP15_p187g100at 94.983 kb on + strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 94.991 kb on - strand, within HP15_p187g100at 95.015 kb on + strand, within HP15_p187g100at 95.020 kb on + strand, within HP15_p187g100at 95.049 kb on + strandat 95.057 kb on - strandat 95.057 kb on - strandat 95.057 kb on - strandat 95.115 kb on + strandat 95.116 kb on + strandat 95.121 kb on + strandat 95.121 kb on + strandat 95.129 kb on + strandat 95.140 kb on + strandat 95.142 kb on + strandat 95.148 kb on - strandat 95.148 kb on - strandat 95.150 kb on - strand, within HP15_p187g101at 95.186 kb on + strand, within HP15_p187g101at 95.236 kb on + strand, within HP15_p187g101at 95.246 kb on + strand, within HP15_p187g101at 95.277 kb on - strand, within HP15_p187g101at 95.317 kb on + strand, within HP15_p187g101at 95.334 kb on - strand, within HP15_p187g101at 95.334 kb on - strand, within HP15_p187g101at 95.363 kb on - strand, within HP15_p187g101at 95.382 kb on + strand, within HP15_p187g101at 95.436 kb on - strand, within HP15_p187g101at 95.492 kb on + strand, within HP15_p187g101at 95.501 kb on - strand, within HP15_p187g101at 95.512 kb on + strand, within HP15_p187g101at 95.586 kb on - strand, within HP15_p187g101at 95.691 kb on - strand, within HP15_p187g101at 95.691 kb on - strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.693 kb on + strand, within HP15_p187g101at 95.701 kb on - strand, within HP15_p187g101at 95.731 kb on - strand, within HP15_p187g101at 95.793 kb on - strandat 95.865 kb on + strandat 95.873 kb on - strandat 95.873 kb on - strandat 95.916 kb on + strandat 95.958 kb on - strandat 95.965 kb on + strandat 96.013 kb on + strandat 96.042 kb on - strandat 96.047 kb on + strandat 96.067 kb on + strand, within HP15_p187g102at 96.076 kb on - strand, within HP15_p187g102at 96.077 kb on + strand, within HP15_p187g102

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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93,530 - HP15_p187g99 0.38 +0.5
93,712 + HP15_p187g99 0.52 -0.1
93,720 - HP15_p187g99 0.53 +0.3
93,752 - HP15_p187g99 0.55 -0.0
93,792 - HP15_p187g99 0.58 +0.7
93,792 - HP15_p187g99 0.58 -0.3
93,801 + HP15_p187g99 0.59 +0.4
93,801 + HP15_p187g99 0.59 +0.1
93,801 + HP15_p187g99 0.59 +0.3
93,809 - HP15_p187g99 0.59 +0.9
93,809 - HP15_p187g99 0.59 +1.0
93,814 - HP15_p187g99 0.60 -0.6
93,816 + HP15_p187g99 0.60 +0.6
93,824 + HP15_p187g99 0.61 +1.9
93,824 + HP15_p187g99 0.61 +0.5
93,824 + HP15_p187g99 0.61 +0.4
93,832 - HP15_p187g99 0.61 +0.1
93,832 - HP15_p187g99 0.61 +1.1
93,832 - HP15_p187g99 0.61 +0.7
93,837 - HP15_p187g99 0.62 -0.2
93,852 + HP15_p187g99 0.63 -0.0
93,869 + HP15_p187g99 0.64 -0.2
93,870 - HP15_p187g99 0.64 +0.4
93,890 + HP15_p187g99 0.66 -0.5
93,935 - HP15_p187g99 0.69 +1.0
93,945 + HP15_p187g99 0.70 +1.5
93,959 + HP15_p187g99 0.71 -1.1
93,965 + HP15_p187g99 0.71 +0.5
93,972 - HP15_p187g99 0.72 +0.3
93,973 - HP15_p187g99 0.72 -0.0
94,007 - HP15_p187g99 0.75 -0.9
94,009 - HP15_p187g99 0.75 +0.7
94,013 + HP15_p187g99 0.75 -0.9
94,021 - HP15_p187g99 0.76 -0.9
94,038 - HP15_p187g99 0.77 -0.8
94,120 + HP15_p187g99 0.83 -0.2
94,133 - HP15_p187g99 0.84 -0.2
94,135 - HP15_p187g99 0.84 +0.3
94,135 - HP15_p187g99 0.84 +0.4
94,142 + HP15_p187g99 0.85 +0.5
94,169 - HP15_p187g99 0.87 +0.0
94,171 - HP15_p187g99 0.87 -0.2
94,174 + HP15_p187g99 0.87 +0.5
94,182 - HP15_p187g99 0.88 +1.2
94,182 - HP15_p187g99 0.88 +0.3
94,231 + +0.2
94,239 - -0.5
94,245 - -0.7
94,247 + +1.1
94,317 + +0.2
94,325 - +0.4
94,325 - +0.1
94,325 - +1.4
94,365 - +0.4
94,416 + +0.4
94,456 - -0.2
94,497 + -0.4
94,558 + +0.1
94,559 + -0.0
94,582 + HP15_p187g100 0.12 -0.3
94,603 + HP15_p187g100 0.16 +0.6
94,611 - HP15_p187g100 0.18 +0.4
94,656 + HP15_p187g100 0.25 -0.0
94,668 + HP15_p187g100 0.28 -1.4
94,668 + HP15_p187g100 0.28 +0.7
94,668 + HP15_p187g100 0.28 +1.5
94,676 - HP15_p187g100 0.29 +1.0
94,676 - HP15_p187g100 0.29 +0.6
94,717 + HP15_p187g100 0.36 -0.9
94,719 + HP15_p187g100 0.36 -0.9
94,719 + HP15_p187g100 0.36 +0.3
94,719 + HP15_p187g100 0.36 +1.1
94,719 + HP15_p187g100 0.36 -0.1
94,719 + HP15_p187g100 0.36 +0.6
94,727 - HP15_p187g100 0.38 -1.3
94,727 - HP15_p187g100 0.38 -0.3
94,753 + HP15_p187g100 0.42 -0.5
94,769 - HP15_p187g100 0.45 +0.4
94,784 + HP15_p187g100 0.48 +0.7
94,792 - HP15_p187g100 0.49 -1.5
94,835 + HP15_p187g100 0.57 +0.7
94,841 + HP15_p187g100 0.58 +0.7
94,849 - HP15_p187g100 0.59 -0.7
94,863 - HP15_p187g100 0.62 +0.7
94,894 - HP15_p187g100 0.67 -1.8
94,934 + HP15_p187g100 0.74 +0.7
94,944 + HP15_p187g100 0.76 +0.3
94,975 + HP15_p187g100 0.81 +0.0
94,983 + HP15_p187g100 0.83 -0.1
94,983 + HP15_p187g100 0.83 -0.7
94,991 - HP15_p187g100 0.84 -0.6
94,991 - HP15_p187g100 0.84 +0.3
94,991 - HP15_p187g100 0.84 +0.1
94,991 - HP15_p187g100 0.84 -0.9
94,991 - HP15_p187g100 0.84 -0.3
94,991 - HP15_p187g100 0.84 -0.2
94,991 - HP15_p187g100 0.84 -1.6
95,015 + HP15_p187g100 0.88 -0.7
95,020 + HP15_p187g100 0.89 +0.1
95,049 + -0.1
95,057 - -0.2
95,057 - +0.7
95,057 - -0.3
95,115 + +0.4
95,116 + +0.2
95,121 + +0.4
95,121 + +4.2
95,129 + +0.0
95,140 + +1.1
95,142 + -0.4
95,148 - -1.6
95,148 - +0.6
95,150 - HP15_p187g101 0.10 -1.0
95,186 + HP15_p187g101 0.15 -0.4
95,236 + HP15_p187g101 0.22 +0.2
95,246 + HP15_p187g101 0.23 -1.5
95,277 - HP15_p187g101 0.27 +0.8
95,317 + HP15_p187g101 0.33 +0.1
95,334 - HP15_p187g101 0.35 -0.3
95,334 - HP15_p187g101 0.35 +0.1
95,363 - HP15_p187g101 0.39 +0.1
95,382 + HP15_p187g101 0.42 -0.4
95,436 - HP15_p187g101 0.49 -1.4
95,492 + HP15_p187g101 0.57 -0.5
95,501 - HP15_p187g101 0.58 +0.1
95,512 + HP15_p187g101 0.60 -1.0
95,586 - HP15_p187g101 0.70 -1.7
95,691 - HP15_p187g101 0.84 +0.4
95,691 - HP15_p187g101 0.84 -0.4
95,693 + HP15_p187g101 0.84 -0.7
95,693 + HP15_p187g101 0.84 +0.2
95,693 + HP15_p187g101 0.84 +0.8
95,693 + HP15_p187g101 0.84 -0.6
95,701 - HP15_p187g101 0.86 -1.7
95,731 - HP15_p187g101 0.90 +0.1
95,793 - +0.6
95,865 + -0.9
95,873 - +0.1
95,873 - +0.3
95,916 + +0.6
95,958 - -1.7
95,965 + -0.9
96,013 + +0.4
96,042 - -2.4
96,047 + -1.7
96,067 + HP15_p187g102 0.10 +0.8
96,076 - HP15_p187g102 0.11 +0.1
96,077 + HP15_p187g102 0.11 +0.3

Or see this region's nucleotide sequence