Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g66 and HP15_p187g67 overlap by 19 nucleotides HP15_p187g67 and HP15_p187g68 are separated by 56 nucleotides
HP15_p187g66: HP15_p187g66 - UDP-glucose 4-epimerase, at 58,756 to 59,787
_p187g66
HP15_p187g67: HP15_p187g67 - glycosyl transferase group 1 family protein, at 59,769 to 60,950
_p187g67
HP15_p187g68: HP15_p187g68 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 61,007 to 62,269
_p187g68
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 58.813 kb on + strand at 58.853 kb on + strand at 58.888 kb on - strand, within HP15_p187g66 at 58.924 kb on + strand, within HP15_p187g66 at 58.945 kb on + strand, within HP15_p187g66 at 58.960 kb on - strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.969 kb on - strand, within HP15_p187g66 at 58.980 kb on + strand, within HP15_p187g66 at 58.983 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.993 kb on - strand, within HP15_p187g66 at 59.021 kb on + strand, within HP15_p187g66 at 59.036 kb on - strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.051 kb on - strand, within HP15_p187g66 at 59.063 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.087 kb on + strand, within HP15_p187g66 at 59.129 kb on - strand, within HP15_p187g66 at 59.172 kb on + strand, within HP15_p187g66 at 59.181 kb on - strand, within HP15_p187g66 at 59.188 kb on + strand, within HP15_p187g66 at 59.190 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66 at 59.212 kb on + strand, within HP15_p187g66 at 59.212 kb on + strand, within HP15_p187g66 at 59.310 kb on - strand, within HP15_p187g66 at 59.338 kb on - strand, within HP15_p187g66 at 59.395 kb on - strand, within HP15_p187g66 at 59.414 kb on + strand, within HP15_p187g66 at 59.414 kb on + strand, within HP15_p187g66 at 59.422 kb on - strand, within HP15_p187g66 at 59.429 kb on - strand, within HP15_p187g66 at 59.437 kb on - strand, within HP15_p187g66 at 59.506 kb on - strand, within HP15_p187g66 at 59.538 kb on + strand, within HP15_p187g66 at 59.553 kb on - strand, within HP15_p187g66 at 59.560 kb on - strand, within HP15_p187g66 at 59.562 kb on - strand, within HP15_p187g66 at 59.596 kb on + strand, within HP15_p187g66 at 59.601 kb on + strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.609 kb on - strand, within HP15_p187g66 at 59.615 kb on - strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.694 kb on + strand at 59.726 kb on + strand at 59.733 kb on + strand at 59.734 kb on - strand at 59.741 kb on - strand at 59.743 kb on + strand at 59.766 kb on + strand at 59.768 kb on - strand at 59.790 kb on + strand at 59.841 kb on + strand at 59.874 kb on + strand at 59.925 kb on + strand, within HP15_p187g67 at 59.928 kb on - strand, within HP15_p187g67 at 59.955 kb on - strand, within HP15_p187g67 at 60.006 kb on + strand, within HP15_p187g67 at 60.015 kb on - strand, within HP15_p187g67 at 60.020 kb on - strand, within HP15_p187g67 at 60.027 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.153 kb on + strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.269 kb on - strand, within HP15_p187g67 at 60.293 kb on - strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.310 kb on - strand, within HP15_p187g67 at 60.311 kb on - strand, within HP15_p187g67 at 60.333 kb on + strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.369 kb on + strand, within HP15_p187g67 at 60.401 kb on + strand, within HP15_p187g67 at 60.424 kb on - strand, within HP15_p187g67 at 60.425 kb on + strand, within HP15_p187g67 at 60.425 kb on - strand, within HP15_p187g67 at 60.449 kb on + strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.492 kb on - strand, within HP15_p187g67 at 60.540 kb on - strand, within HP15_p187g67 at 60.550 kb on - strand, within HP15_p187g67 at 60.566 kb on - strand, within HP15_p187g67 at 60.568 kb on + strand, within HP15_p187g67 at 60.620 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.655 kb on + strand, within HP15_p187g67 at 60.685 kb on + strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.723 kb on + strand, within HP15_p187g67 at 60.729 kb on - strand, within HP15_p187g67 at 60.746 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.806 kb on - strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.824 kb on - strand, within HP15_p187g67 at 60.824 kb on - strand, within HP15_p187g67 at 60.825 kb on - strand, within HP15_p187g67 at 60.866 kb on - strand at 60.887 kb on + strand at 60.907 kb on - strand at 60.998 kb on - strand at 61.014 kb on + strand at 61.033 kb on + strand at 61.048 kb on + strand at 61.072 kb on + strand at 61.097 kb on - strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.128 kb on - strand at 61.128 kb on - strand at 61.128 kb on - strand at 61.145 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.168 kb on + strand, within HP15_p187g68 at 61.184 kb on - strand, within HP15_p187g68 at 61.269 kb on - strand, within HP15_p187g68 at 61.325 kb on - strand, within HP15_p187g68 at 61.335 kb on - strand, within HP15_p187g68 at 61.358 kb on - strand, within HP15_p187g68 at 61.363 kb on - strand, within HP15_p187g68 at 61.402 kb on - strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on - strand, within HP15_p187g68 at 61.437 kb on - strand, within HP15_p187g68 at 61.439 kb on + strand, within HP15_p187g68 at 61.441 kb on + strand, within HP15_p187g68 at 61.441 kb on + strand, within HP15_p187g68 at 61.447 kb on - strand, within HP15_p187g68 at 61.449 kb on - strand, within HP15_p187g68 at 61.503 kb on - strand, within HP15_p187g68 at 61.545 kb on - strand, within HP15_p187g68 at 61.564 kb on - strand, within HP15_p187g68 at 61.585 kb on - strand, within HP15_p187g68 at 61.617 kb on - strand, within HP15_p187g68 at 61.637 kb on + strand, within HP15_p187g68 at 61.689 kb on + strand, within HP15_p187g68 at 61.689 kb on + strand, within HP15_p187g68 at 61.757 kb on - strand, within HP15_p187g68 at 61.792 kb on - strand, within HP15_p187g68 at 61.808 kb on + strand, within HP15_p187g68 at 61.828 kb on + strand, within HP15_p187g68 at 61.858 kb on + strand, within HP15_p187g68 at 61.881 kb on + strand, within HP15_p187g68 at 61.906 kb on + strand, within HP15_p187g68
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 58,813 + +0.2 58,853 + -1.7 58,888 - HP15_p187g66 0.13 -0.2 58,924 + HP15_p187g66 0.16 -0.2 58,945 + HP15_p187g66 0.18 +0.4 58,960 - HP15_p187g66 0.20 -0.8 58,961 + HP15_p187g66 0.20 +0.4 58,961 + HP15_p187g66 0.20 +0.2 58,969 - HP15_p187g66 0.21 +0.1 58,980 + HP15_p187g66 0.22 -0.2 58,983 + HP15_p187g66 0.22 -1.6 58,986 + HP15_p187g66 0.22 -0.1 58,986 + HP15_p187g66 0.22 -0.1 58,993 - HP15_p187g66 0.23 +0.5 59,021 + HP15_p187g66 0.26 -0.2 59,036 - HP15_p187g66 0.27 +1.8 59,038 + HP15_p187g66 0.27 -0.3 59,038 + HP15_p187g66 0.27 -0.4 59,046 - HP15_p187g66 0.28 -0.4 59,046 - HP15_p187g66 0.28 +0.6 59,051 - HP15_p187g66 0.29 +0.1 59,063 - HP15_p187g66 0.30 +0.3 59,073 - HP15_p187g66 0.31 -0.9 59,073 - HP15_p187g66 0.31 -0.2 59,087 + HP15_p187g66 0.32 +1.4 59,129 - HP15_p187g66 0.36 +0.5 59,172 + HP15_p187g66 0.40 +0.7 59,181 - HP15_p187g66 0.41 -0.9 59,188 + HP15_p187g66 0.42 +0.7 59,190 + HP15_p187g66 0.42 -0.7 59,195 + HP15_p187g66 0.43 +0.6 59,195 + HP15_p187g66 0.43 -0.2 59,212 + HP15_p187g66 0.44 -0.3 59,212 + HP15_p187g66 0.44 +0.1 59,310 - HP15_p187g66 0.54 +0.2 59,338 - HP15_p187g66 0.56 +0.3 59,395 - HP15_p187g66 0.62 -2.5 59,414 + HP15_p187g66 0.64 +0.4 59,414 + HP15_p187g66 0.64 -0.6 59,422 - HP15_p187g66 0.65 -1.1 59,429 - HP15_p187g66 0.65 +0.3 59,437 - HP15_p187g66 0.66 -1.0 59,506 - HP15_p187g66 0.73 +0.3 59,538 + HP15_p187g66 0.76 +0.7 59,553 - HP15_p187g66 0.77 -1.2 59,560 - HP15_p187g66 0.78 -1.9 59,562 - HP15_p187g66 0.78 -0.3 59,596 + HP15_p187g66 0.81 +0.0 59,601 + HP15_p187g66 0.82 +0.8 59,604 - HP15_p187g66 0.82 +0.5 59,604 - HP15_p187g66 0.82 -0.0 59,604 - HP15_p187g66 0.82 +0.3 59,609 - HP15_p187g66 0.83 -0.6 59,615 - HP15_p187g66 0.83 -0.7 59,629 + HP15_p187g66 0.85 -1.2 59,629 + HP15_p187g66 0.85 +0.1 59,629 + HP15_p187g66 0.85 -0.4 59,629 + HP15_p187g66 0.85 -1.9 59,629 + HP15_p187g66 0.85 -0.3 59,629 + HP15_p187g66 0.85 -0.1 59,629 + HP15_p187g66 0.85 -0.5 59,637 - HP15_p187g66 0.85 -0.9 59,637 - HP15_p187g66 0.85 +1.1 59,637 - HP15_p187g66 0.85 +0.4 59,637 - HP15_p187g66 0.85 -0.5 59,637 - HP15_p187g66 0.85 +0.8 59,694 + +0.3 59,726 + +0.2 59,733 + +0.8 59,734 - +1.8 59,741 - +0.6 59,743 + +1.5 59,766 + -0.0 59,768 - -0.3 59,790 + +0.2 59,841 + -2.2 59,874 + +0.2 59,925 + HP15_p187g67 0.13 -0.3 59,928 - HP15_p187g67 0.13 -1.6 59,955 - HP15_p187g67 0.16 -0.1 60,006 + HP15_p187g67 0.20 -0.8 60,015 - HP15_p187g67 0.21 +0.9 60,020 - HP15_p187g67 0.21 +0.8 60,027 + HP15_p187g67 0.22 +0.9 60,105 + HP15_p187g67 0.28 -0.2 60,105 + HP15_p187g67 0.28 -1.2 60,113 - HP15_p187g67 0.29 -1.5 60,113 - HP15_p187g67 0.29 -0.7 60,153 + HP15_p187g67 0.32 -0.5 60,161 - HP15_p187g67 0.33 -1.2 60,161 - HP15_p187g67 0.33 -0.4 60,207 + HP15_p187g67 0.37 +0.3 60,207 + HP15_p187g67 0.37 +1.4 60,262 + HP15_p187g67 0.42 -1.2 60,262 + HP15_p187g67 0.42 -0.1 60,269 - HP15_p187g67 0.42 +0.2 60,293 - HP15_p187g67 0.44 -1.0 60,302 + HP15_p187g67 0.45 +0.6 60,302 + HP15_p187g67 0.45 +0.3 60,302 + HP15_p187g67 0.45 -1.0 60,310 - HP15_p187g67 0.46 +0.2 60,311 - HP15_p187g67 0.46 -0.4 60,333 + HP15_p187g67 0.48 -0.5 60,341 - HP15_p187g67 0.48 -0.4 60,341 - HP15_p187g67 0.48 +0.9 60,369 + HP15_p187g67 0.51 +0.8 60,401 + HP15_p187g67 0.53 -0.5 60,424 - HP15_p187g67 0.55 +1.3 60,425 + HP15_p187g67 0.55 -0.3 60,425 - HP15_p187g67 0.55 +0.0 60,449 + HP15_p187g67 0.58 +0.3 60,457 - HP15_p187g67 0.58 -1.2 60,457 - HP15_p187g67 0.58 +0.2 60,457 - HP15_p187g67 0.58 +0.7 60,471 - HP15_p187g67 0.59 +0.3 60,471 - HP15_p187g67 0.59 -1.3 60,492 - HP15_p187g67 0.61 -1.0 60,540 - HP15_p187g67 0.65 -0.6 60,550 - HP15_p187g67 0.66 -0.3 60,566 - HP15_p187g67 0.67 -0.9 60,568 + HP15_p187g67 0.68 -0.3 60,620 + HP15_p187g67 0.72 -0.7 60,635 + HP15_p187g67 0.73 -1.9 60,635 + HP15_p187g67 0.73 -0.4 60,655 + HP15_p187g67 0.75 -1.0 60,685 + HP15_p187g67 0.77 +0.3 60,715 - HP15_p187g67 0.80 +0.7 60,715 - HP15_p187g67 0.80 -0.6 60,723 + HP15_p187g67 0.81 +1.2 60,729 - HP15_p187g67 0.81 +0.4 60,746 + HP15_p187g67 0.83 -0.1 60,780 + HP15_p187g67 0.86 -0.4 60,780 + HP15_p187g67 0.86 -0.9 60,780 + HP15_p187g67 0.86 +0.8 60,780 + HP15_p187g67 0.86 -0.3 60,780 + HP15_p187g67 0.86 +0.7 60,780 + HP15_p187g67 0.86 -0.1 60,788 - HP15_p187g67 0.86 -0.6 60,788 - HP15_p187g67 0.86 -0.3 60,788 - HP15_p187g67 0.86 -2.1 60,806 - HP15_p187g67 0.88 +0.4 60,817 + HP15_p187g67 0.89 +0.3 60,817 + HP15_p187g67 0.89 -1.5 60,817 + HP15_p187g67 0.89 +0.6 60,817 + HP15_p187g67 0.89 +0.0 60,817 + HP15_p187g67 0.89 +0.6 60,824 - HP15_p187g67 0.89 -0.1 60,824 - HP15_p187g67 0.89 -0.5 60,825 - HP15_p187g67 0.89 +0.6 60,866 - +0.2 60,887 + +0.1 60,907 - +0.1 60,998 - -0.8 61,014 + -0.8 61,033 + +0.8 61,048 + +0.4 61,072 + +0.3 61,097 - -0.3 61,120 + -0.2 61,120 + +0.5 61,120 + -1.3 61,128 - -0.1 61,128 - +0.1 61,128 - -0.4 61,145 + HP15_p187g68 0.11 -0.2 61,155 + HP15_p187g68 0.12 -0.9 61,155 + HP15_p187g68 0.12 -3.4 61,155 + HP15_p187g68 0.12 +0.3 61,163 - HP15_p187g68 0.12 -0.4 61,163 - HP15_p187g68 0.12 -0.6 61,163 - HP15_p187g68 0.12 -0.4 61,163 - HP15_p187g68 0.12 -1.2 61,163 - HP15_p187g68 0.12 -0.4 61,168 + HP15_p187g68 0.13 +0.6 61,184 - HP15_p187g68 0.14 +1.7 61,269 - HP15_p187g68 0.21 +0.3 61,325 - HP15_p187g68 0.25 +0.5 61,335 - HP15_p187g68 0.26 -1.0 61,358 - HP15_p187g68 0.28 +0.3 61,363 - HP15_p187g68 0.28 -0.1 61,402 - HP15_p187g68 0.31 +0.5 61,429 + HP15_p187g68 0.33 -0.7 61,429 + HP15_p187g68 0.33 -0.2 61,429 + HP15_p187g68 0.33 -0.3 61,429 - HP15_p187g68 0.33 -0.2 61,437 - HP15_p187g68 0.34 -0.6 61,439 + HP15_p187g68 0.34 -0.5 61,441 + HP15_p187g68 0.34 +0.5 61,441 + HP15_p187g68 0.34 -0.6 61,447 - HP15_p187g68 0.35 -0.6 61,449 - HP15_p187g68 0.35 -0.0 61,503 - HP15_p187g68 0.39 +0.5 61,545 - HP15_p187g68 0.43 -1.8 61,564 - HP15_p187g68 0.44 +0.4 61,585 - HP15_p187g68 0.46 +0.2 61,617 - HP15_p187g68 0.48 -0.7 61,637 + HP15_p187g68 0.50 -0.1 61,689 + HP15_p187g68 0.54 -1.3 61,689 + HP15_p187g68 0.54 -1.2 61,757 - HP15_p187g68 0.59 -0.4 61,792 - HP15_p187g68 0.62 -0.5 61,808 + HP15_p187g68 0.63 -1.9 61,828 + HP15_p187g68 0.65 -0.7 61,858 + HP15_p187g68 0.67 -0.2 61,881 + HP15_p187g68 0.69 +0.7 61,906 + HP15_p187g68 0.71 +0.8
Or see this region's nucleotide sequence