Strain Fitness in Marinobacter adhaerens HP15 around HP15_3995

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
4,224,491	+		HP15_3993	0.12	-0.3
4,224,567	+		HP15_3993	0.23	+0.6
4,224,573	+		HP15_3993	0.24	-0.3
4,224,641	+		HP15_3993	0.33	+0.2
4,224,641	+		HP15_3993	0.33	-0.1
4,224,641	-		HP15_3993	0.33	-0.5
4,224,708	+		HP15_3993	0.43	+0.5
4,224,741	+		HP15_3993	0.48	-0.9
4,224,820	+		HP15_3993	0.59	-0.3
4,224,825	+		HP15_3993	0.60	-1.0
4,224,825	+		HP15_3993	0.60	+0.9
4,224,833	-		HP15_3993	0.61	-1.1
4,224,888	-		HP15_3993	0.69	-0.8
4,224,890	-		HP15_3993	0.70	-0.5
4,224,890	-		HP15_3993	0.70	-0.2
4,224,921	-		HP15_3993	0.74	+0.2
4,225,043	+				+0.5
4,225,043	+				-0.4
4,225,043	+				-0.2
4,225,131	-		HP15_3994	0.12	-0.4
4,225,137	-		HP15_3994	0.14	-2.0
4,225,162	+		HP15_3994	0.23	-0.6
4,225,238	+		HP15_3994	0.49	-0.7
4,225,239	-		HP15_3994	0.50	-0.2
4,225,260	+		HP15_3994	0.57	+0.3
4,225,371	-				-0.7
4,225,386	-				-0.7
4,225,492	-		HP15_3995	0.14	-1.5
4,225,604	+		HP15_3995	0.28	-1.2
4,225,639	+		HP15_3995	0.33	-0.7
4,225,659	-		HP15_3995	0.35	-0.1
4,225,669	+		HP15_3995	0.37	+0.8
4,225,679	+		HP15_3995	0.38	-0.2
4,225,768	-		HP15_3995	0.50	+0.0
4,225,781	-		HP15_3995	0.51	-0.4
4,225,854	+		HP15_3995	0.61	-0.9
4,225,903	-		HP15_3995	0.67	+0.4
4,225,930	+		HP15_3995	0.71	-0.2
4,225,986	-		HP15_3995	0.78	+0.1
4,225,986	-		HP15_3995	0.78	+0.2
4,225,998	-		HP15_3995	0.80	-0.2
4,226,056	-		HP15_3995	0.87	+0.3
4,226,058	+		HP15_3995	0.87	+0.2
4,226,066	-		HP15_3995	0.88	-0.3
4,226,137	+				+0.6
4,226,137	+				-1.1
4,226,255	+				-0.2
4,226,270	-				+0.3
4,226,440	-		HP15_3996	0.18	+0.7
4,226,451	+		HP15_3996	0.19	+1.2
4,226,555	+		HP15_3996	0.26	-0.8
4,226,607	-		HP15_3996	0.29	+1.8
4,226,639	-		HP15_3996	0.31	-0.6
4,226,777	+		HP15_3996	0.40	+0.3
4,226,796	-		HP15_3996	0.42	+0.2
4,226,857	-		HP15_3996	0.46	+0.2
4,226,857	-		HP15_3996	0.46	+0.8
4,226,857	-		HP15_3996	0.46	+0.0
4,226,857	-		HP15_3996	0.46	-0.4
4,227,064	-		HP15_3996	0.59	-0.8
4,227,069	-		HP15_3996	0.60	+0.4
4,227,069	-		HP15_3996	0.60	+2.2
4,227,079	+		HP15_3996	0.60	+0.1
4,227,082	-		HP15_3996	0.60	-0.6