Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2355 and HP15_2356 overlap by 10 nucleotides HP15_2356 and HP15_2357 are separated by 1 nucleotides HP15_2357 and HP15_2358 are separated by 133 nucleotides
HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162
_2355
HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004
_2356
HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797
_2357
HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538
_2358
Position (kb)
2482
2483
2484 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2481.266 kb on - strand, within HP15_2355 at 2481.277 kb on + strand, within HP15_2355 at 2481.403 kb on + strand, within HP15_2355 at 2481.533 kb on - strand, within HP15_2355 at 2481.705 kb on - strand, within HP15_2355 at 2481.798 kb on - strand, within HP15_2355 at 2481.813 kb on + strand, within HP15_2355 at 2481.813 kb on + strand, within HP15_2355 at 2481.821 kb on - strand, within HP15_2355 at 2481.896 kb on + strand, within HP15_2355 at 2481.929 kb on + strand, within HP15_2355 at 2482.017 kb on - strand at 2482.098 kb on + strand at 2482.223 kb on + strand at 2482.264 kb on - strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.400 kb on - strand, within HP15_2356 at 2482.499 kb on + strand, within HP15_2356 at 2482.529 kb on + strand, within HP15_2356 at 2482.617 kb on + strand, within HP15_2356 at 2482.861 kb on + strand, within HP15_2356 at 2482.988 kb on + strand at 2483.081 kb on - strand at 2483.339 kb on - strand, within HP15_2357 at 2483.345 kb on - strand, within HP15_2357 at 2483.348 kb on - strand, within HP15_2357 at 2483.412 kb on - strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.467 kb on + strand, within HP15_2357 at 2483.657 kb on - strand, within HP15_2357 at 2483.774 kb on + strand at 2483.774 kb on + strand at 2483.775 kb on + strand at 2483.809 kb on - strand at 2483.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 2,481,266 - HP15_2355 0.55 +0.7 2,481,277 + HP15_2355 0.56 -1.2 2,481,403 + HP15_2355 0.62 -0.5 2,481,533 - HP15_2355 0.68 -1.1 2,481,705 - HP15_2355 0.77 -1.3 2,481,798 - HP15_2355 0.82 +0.1 2,481,813 + HP15_2355 0.82 -1.1 2,481,813 + HP15_2355 0.82 -0.5 2,481,821 - HP15_2355 0.83 -1.0 2,481,896 + HP15_2355 0.87 -2.2 2,481,929 + HP15_2355 0.88 -0.0 2,482,017 - -1.1 2,482,098 + -0.2 2,482,223 + +0.2 2,482,264 - HP15_2356 0.13 -1.4 2,482,331 + HP15_2356 0.21 -0.3 2,482,331 + HP15_2356 0.21 -1.8 2,482,400 - HP15_2356 0.29 -0.3 2,482,499 + HP15_2356 0.41 -0.5 2,482,529 + HP15_2356 0.44 -0.1 2,482,617 + HP15_2356 0.54 -0.6 2,482,861 + HP15_2356 0.83 -0.7 2,482,988 + -1.2 2,483,081 - -0.0 2,483,339 - HP15_2357 0.42 -0.1 2,483,345 - HP15_2357 0.43 -2.9 2,483,348 - HP15_2357 0.43 -0.7 2,483,412 - HP15_2357 0.51 -0.3 2,483,443 + HP15_2357 0.55 -0.8 2,483,443 + HP15_2357 0.55 -1.2 2,483,467 + HP15_2357 0.58 -0.4 2,483,657 - HP15_2357 0.82 -0.5 2,483,774 + -1.5 2,483,774 + -0.5 2,483,775 + -1.6 2,483,809 - +0.5 2,483,928 + -0.5
Or see this region's nucleotide sequence