Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_912 and HP15_913 overlap by 22 nucleotides HP15_913 and HP15_914 overlap by 1 nucleotides HP15_914 and HP15_915 are separated by 12 nucleotides
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
HP15_913: HP15_913 - conserved hypothetical protein, at 925,713 to 926,525
_913
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
HP15_915: HP15_915 - secreted protein containing sulphatase-modifying factor domain, at 928,655 to 929,614
_915
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 925.728 kb on - strand at 925.885 kb on + strand, within HP15_913 at 925.885 kb on + strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.896 kb on + strand, within HP15_913 at 925.912 kb on - strand, within HP15_913 at 925.919 kb on + strand, within HP15_913 at 925.961 kb on - strand, within HP15_913 at 925.979 kb on - strand, within HP15_913 at 926.017 kb on + strand, within HP15_913 at 926.089 kb on - strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.410 kb on - strand, within HP15_913 at 926.423 kb on + strand, within HP15_913 at 926.466 kb on - strand at 926.483 kb on + strand at 926.491 kb on - strand at 926.573 kb on + strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.644 kb on - strand at 926.733 kb on + strand at 926.874 kb on + strand, within HP15_914 at 926.882 kb on - strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.895 kb on + strand, within HP15_914 at 926.903 kb on - strand, within HP15_914 at 926.990 kb on + strand, within HP15_914 at 926.998 kb on - strand, within HP15_914 at 927.159 kb on + strand, within HP15_914 at 927.167 kb on - strand, within HP15_914 at 927.289 kb on - strand, within HP15_914 at 927.304 kb on - strand, within HP15_914 at 927.326 kb on - strand, within HP15_914 at 927.350 kb on - strand, within HP15_914 at 927.405 kb on + strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.470 kb on - strand, within HP15_914 at 927.478 kb on + strand, within HP15_914 at 927.486 kb on - strand, within HP15_914 at 927.546 kb on - strand, within HP15_914 at 927.648 kb on + strand, within HP15_914 at 927.690 kb on + strand, within HP15_914 at 927.691 kb on - strand, within HP15_914 at 927.703 kb on + strand, within HP15_914 at 927.718 kb on + strand, within HP15_914 at 927.737 kb on - strand, within HP15_914 at 927.824 kb on - strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.956 kb on - strand, within HP15_914 at 928.059 kb on + strand, within HP15_914 at 928.188 kb on - strand, within HP15_914 at 928.306 kb on + strand, within HP15_914 at 928.666 kb on + strand at 928.839 kb on - strand, within HP15_915 at 929.142 kb on - strand, within HP15_915 at 929.184 kb on - strand, within HP15_915 at 929.235 kb on + strand, within HP15_915 at 929.348 kb on - strand, within HP15_915 at 929.446 kb on - strand, within HP15_915
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 925,728 - -0.8 925,885 + HP15_913 0.21 -0.0 925,885 + HP15_913 0.21 +0.6 925,893 - HP15_913 0.22 -0.1 925,893 - HP15_913 0.22 -0.6 925,896 + HP15_913 0.23 -0.6 925,912 - HP15_913 0.24 -0.2 925,919 + HP15_913 0.25 -1.3 925,961 - HP15_913 0.31 -0.0 925,979 - HP15_913 0.33 +0.3 926,017 + HP15_913 0.37 +0.3 926,089 - HP15_913 0.46 -0.1 926,130 + HP15_913 0.51 +1.2 926,130 + HP15_913 0.51 +0.6 926,392 + HP15_913 0.84 +0.9 926,392 + HP15_913 0.84 -0.7 926,410 - HP15_913 0.86 +0.4 926,423 + HP15_913 0.87 +0.9 926,466 - +0.0 926,483 + -2.2 926,491 - -0.4 926,573 + +0.2 926,599 - -0.0 926,599 - +0.0 926,599 - -0.3 926,644 - -0.1 926,733 + +0.8 926,874 + HP15_914 0.16 +0.9 926,882 - HP15_914 0.17 -0.0 926,895 + HP15_914 0.17 -0.5 926,895 + HP15_914 0.17 -0.8 926,903 - HP15_914 0.18 -0.0 926,990 + HP15_914 0.22 +0.3 926,998 - HP15_914 0.22 +0.2 927,159 + HP15_914 0.30 +3.4 927,167 - HP15_914 0.30 +0.7 927,289 - HP15_914 0.36 +0.5 927,304 - HP15_914 0.37 -0.8 927,326 - HP15_914 0.38 +0.3 927,350 - HP15_914 0.39 +0.4 927,405 + HP15_914 0.42 -0.3 927,470 - HP15_914 0.45 +0.3 927,470 - HP15_914 0.45 -0.1 927,478 + HP15_914 0.45 +0.0 927,486 - HP15_914 0.45 +0.1 927,546 - HP15_914 0.48 +1.0 927,648 + HP15_914 0.53 -0.1 927,690 + HP15_914 0.55 +0.5 927,691 - HP15_914 0.55 +0.3 927,703 + HP15_914 0.56 +0.6 927,718 + HP15_914 0.56 +1.2 927,737 - HP15_914 0.57 +0.4 927,824 - HP15_914 0.61 +1.1 927,931 + HP15_914 0.66 -0.1 927,931 + HP15_914 0.66 -0.6 927,956 - HP15_914 0.68 +0.8 928,059 + HP15_914 0.72 -0.2 928,188 - HP15_914 0.79 -0.3 928,306 + HP15_914 0.84 +0.2 928,666 + +1.3 928,839 - HP15_915 0.19 -0.8 929,142 - HP15_915 0.51 +0.4 929,184 - HP15_915 0.55 +0.5 929,235 + HP15_915 0.60 +0.8 929,348 - HP15_915 0.72 +0.5 929,446 - HP15_915 0.82 +0.4
Or see this region's nucleotide sequence