Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_909 and HP15_910 are separated by 27 nucleotides HP15_910 and HP15_911 are separated by 3 nucleotides HP15_911 and HP15_912 are separated by 132 nucleotides
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
HP15_910: HP15_910 - 3-hydroxyisobutyrate dehydrogenase, at 922,258 to 923,145
_910
HP15_911: HP15_911 - conserved hypothetical protein, at 923,149 to 923,481
_911
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
Position (kb) 923
924 Strain fitness (log2 ratio) -2
-1
0
1 at 922.353 kb on + strand, within HP15_910 at 922.496 kb on - strand, within HP15_910 at 922.647 kb on - strand, within HP15_910 at 922.673 kb on + strand, within HP15_910 at 922.940 kb on - strand, within HP15_910 at 922.996 kb on + strand, within HP15_910 at 923.078 kb on - strand at 923.089 kb on - strand at 923.100 kb on - strand at 923.130 kb on + strand at 923.130 kb on + strand at 923.263 kb on + strand, within HP15_911 at 923.265 kb on + strand, within HP15_911 at 923.325 kb on - strand, within HP15_911 at 923.367 kb on + strand, within HP15_911 at 923.408 kb on + strand, within HP15_911 at 923.414 kb on - strand, within HP15_911 at 923.458 kb on - strand at 923.490 kb on - strand at 923.734 kb on + strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.752 kb on - strand at 923.812 kb on - strand at 923.961 kb on - strand, within HP15_912 at 924.032 kb on + strand, within HP15_912 at 924.093 kb on + strand, within HP15_912 at 924.106 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.130 kb on - strand, within HP15_912 at 924.370 kb on - strand, within HP15_912 at 924.408 kb on + strand, within HP15_912
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 922,353 + HP15_910 0.11 +0.6 922,496 - HP15_910 0.27 -2.4 922,647 - HP15_910 0.44 +0.2 922,673 + HP15_910 0.47 +0.2 922,940 - HP15_910 0.77 -0.7 922,996 + HP15_910 0.83 +0.5 923,078 - +0.5 923,089 - +0.1 923,100 - +0.4 923,130 + -0.5 923,130 + -0.1 923,263 + HP15_911 0.34 +1.2 923,265 + HP15_911 0.35 +1.7 923,325 - HP15_911 0.53 -0.6 923,367 + HP15_911 0.65 +0.6 923,408 + HP15_911 0.78 +0.5 923,414 - HP15_911 0.80 +0.7 923,458 - -0.1 923,490 - -0.2 923,734 + -0.4 923,747 - -0.0 923,747 - -0.1 923,747 - -0.4 923,752 - +0.5 923,812 - +0.7 923,961 - HP15_912 0.16 -1.2 924,032 + HP15_912 0.20 -0.4 924,093 + HP15_912 0.23 -0.3 924,106 - HP15_912 0.23 -0.5 924,108 - HP15_912 0.23 +0.1 924,108 - HP15_912 0.23 -0.5 924,130 - HP15_912 0.24 +0.5 924,370 - HP15_912 0.36 -0.6 924,408 + HP15_912 0.37 +0.1
Or see this region's nucleotide sequence