Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_596 and HP15_597 are separated by 109 nucleotides HP15_597 and HP15_598 overlap by 4 nucleotides
HP15_596: HP15_596 - signal transduction protein, at 616,589 to 617,845
_596
HP15_597: HP15_597 - peptidase S16, lon domain protein, at 617,955 to 618,476
_597
HP15_598: HP15_598 - phosphoesterase, PA-phosphatase, at 618,473 to 619,930
_598
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 617.130 kb on + strand, within HP15_596 at 617.231 kb on + strand, within HP15_596 at 617.256 kb on + strand, within HP15_596 at 617.296 kb on + strand, within HP15_596 at 617.360 kb on - strand, within HP15_596 at 617.360 kb on - strand, within HP15_596 at 617.453 kb on + strand, within HP15_596 at 617.461 kb on - strand, within HP15_596 at 617.461 kb on - strand, within HP15_596 at 617.514 kb on + strand, within HP15_596 at 617.548 kb on - strand, within HP15_596 at 617.606 kb on + strand, within HP15_596 at 617.637 kb on + strand, within HP15_596 at 617.735 kb on + strand at 617.737 kb on - strand at 617.762 kb on - strand at 617.805 kb on - strand at 617.887 kb on + strand at 617.895 kb on - strand at 617.895 kb on - strand at 617.939 kb on - strand at 617.947 kb on + strand at 617.998 kb on + strand at 618.006 kb on - strand at 618.040 kb on - strand, within HP15_597 at 618.329 kb on + strand, within HP15_597 at 618.421 kb on + strand, within HP15_597 at 618.628 kb on - strand, within HP15_598 at 618.688 kb on + strand, within HP15_598 at 618.696 kb on - strand, within HP15_598 at 619.000 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.159 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.181 kb on - strand, within HP15_598 at 619.191 kb on - strand, within HP15_598 at 619.282 kb on + strand, within HP15_598 at 619.283 kb on - strand, within HP15_598 at 619.352 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.431 kb on - strand, within HP15_598 at 619.451 kb on + strand, within HP15_598
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 617,130 + HP15_596 0.43 +0.7 617,231 + HP15_596 0.51 -0.4 617,256 + HP15_596 0.53 -0.2 617,296 + HP15_596 0.56 +1.0 617,360 - HP15_596 0.61 -0.4 617,360 - HP15_596 0.61 +0.0 617,453 + HP15_596 0.69 -0.5 617,461 - HP15_596 0.69 +0.6 617,461 - HP15_596 0.69 -0.0 617,514 + HP15_596 0.74 +0.4 617,548 - HP15_596 0.76 -0.1 617,606 + HP15_596 0.81 +0.7 617,637 + HP15_596 0.83 -0.3 617,735 + -0.2 617,737 - +0.4 617,762 - +0.5 617,805 - +0.3 617,887 + +0.1 617,895 - +0.6 617,895 - -1.7 617,939 - -0.2 617,947 + -0.4 617,998 + -0.4 618,006 - -2.3 618,040 - HP15_597 0.16 -0.3 618,329 + HP15_597 0.72 +1.9 618,421 + HP15_597 0.89 +1.6 618,628 - HP15_598 0.11 +0.0 618,688 + HP15_598 0.15 +0.6 618,696 - HP15_598 0.15 -0.1 619,000 - HP15_598 0.36 +0.7 619,159 - HP15_598 0.47 -0.3 619,159 - HP15_598 0.47 -0.9 619,181 - HP15_598 0.49 -0.1 619,181 - HP15_598 0.49 -0.2 619,191 - HP15_598 0.49 +0.1 619,282 + HP15_598 0.55 +0.8 619,283 - HP15_598 0.56 -0.6 619,352 - HP15_598 0.60 -0.3 619,431 - HP15_598 0.66 +0.3 619,431 - HP15_598 0.66 -0.5 619,451 + HP15_598 0.67 +0.4
Or see this region's nucleotide sequence