Strain Fitness in Marinobacter adhaerens HP15 around HP15_55

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_54 and HP15_55 are separated by 10 nucleotidesHP15_55 and HP15_56 are separated by 24 nucleotides HP15_54: HP15_54 - acyl-CoA dehydrogenase domain protein, at 59,443 to 60,501 _54 HP15_55: HP15_55 - enoyl-CoA hydratase/isomerase, at 60,512 to 61,312 _55 HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461 _56 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.513 kb on + strandat 59.513 kb on - strandat 59.521 kb on - strandat 59.521 kb on - strandat 59.570 kb on - strand, within HP15_54at 59.580 kb on - strand, within HP15_54at 59.622 kb on - strand, within HP15_54at 59.732 kb on - strand, within HP15_54at 59.794 kb on + strand, within HP15_54at 59.851 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.880 kb on - strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.885 kb on + strand, within HP15_54at 59.894 kb on + strand, within HP15_54at 59.902 kb on - strand, within HP15_54at 60.035 kb on + strand, within HP15_54at 60.068 kb on - strand, within HP15_54at 60.137 kb on - strand, within HP15_54at 60.147 kb on - strand, within HP15_54at 60.174 kb on - strand, within HP15_54at 60.183 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.228 kb on - strand, within HP15_54at 60.270 kb on - strand, within HP15_54at 60.328 kb on - strand, within HP15_54at 60.330 kb on + strand, within HP15_54at 60.332 kb on + strand, within HP15_54at 60.337 kb on + strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.369 kb on + strand, within HP15_54at 60.397 kb on - strandat 60.439 kb on - strandat 60.570 kb on + strandat 60.577 kb on + strandat 60.578 kb on - strandat 60.578 kb on - strandat 60.635 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.643 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.701 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.741 kb on - strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.110 kb on + strand, within HP15_55at 61.111 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.128 kb on - strand, within HP15_55at 61.168 kb on + strand, within HP15_55at 61.186 kb on - strand, within HP15_55at 61.191 kb on - strand, within HP15_55at 61.212 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.489 kb on + strand, within HP15_56at 61.499 kb on - strand, within HP15_56at 61.502 kb on - strand, within HP15_56at 61.550 kb on - strand, within HP15_56at 61.561 kb on + strand, within HP15_56at 61.733 kb on - strand, within HP15_56at 61.751 kb on + strand, within HP15_56at 61.759 kb on - strand, within HP15_56at 61.852 kb on - strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.951 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.998 kb on + strand, within HP15_56at 62.026 kb on - strand, within HP15_56at 62.218 kb on - strand, within HP15_56at 62.243 kb on + strand, within HP15_56at 62.250 kb on + strand, within HP15_56at 62.266 kb on + strand, within HP15_56at 62.287 kb on + strand, within HP15_56at 62.303 kb on - strand, within HP15_56

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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59,513 + -0.2
59,513 - -2.5
59,521 - +0.8
59,521 - +0.1
59,570 - HP15_54 0.12 +0.4
59,580 - HP15_54 0.13 -1.3
59,622 - HP15_54 0.17 -0.1
59,732 - HP15_54 0.27 -0.6
59,794 + HP15_54 0.33 +0.8
59,851 - HP15_54 0.39 -0.6
59,880 - HP15_54 0.41 +0.7
59,880 - HP15_54 0.41 +0.9
59,885 + HP15_54 0.42 -0.1
59,885 + HP15_54 0.42 -0.1
59,894 + HP15_54 0.43 +1.1
59,902 - HP15_54 0.43 -1.0
60,035 + HP15_54 0.56 +0.7
60,068 - HP15_54 0.59 -0.5
60,137 - HP15_54 0.66 +0.2
60,147 - HP15_54 0.66 +2.3
60,174 - HP15_54 0.69 -0.4
60,183 - HP15_54 0.70 +1.4
60,228 - HP15_54 0.74 -0.1
60,228 - HP15_54 0.74 -1.6
60,270 - HP15_54 0.78 -0.5
60,328 - HP15_54 0.84 +0.3
60,330 + HP15_54 0.84 +0.3
60,332 + HP15_54 0.84 +1.4
60,337 + HP15_54 0.84 +0.4
60,338 - HP15_54 0.85 +0.1
60,338 - HP15_54 0.85 +1.3
60,369 + HP15_54 0.87 +0.2
60,397 - -1.0
60,439 - -0.1
60,570 + +0.4
60,577 + +0.2
60,578 - -0.4
60,578 - -1.9
60,635 + HP15_55 0.15 -0.2
60,637 + HP15_55 0.16 -0.2
60,637 + HP15_55 0.16 +0.3
60,637 + HP15_55 0.16 -0.2
60,643 - HP15_55 0.16 +0.1
60,645 - HP15_55 0.17 +0.3
60,645 - HP15_55 0.17 +1.1
60,701 + HP15_55 0.24 -0.3
60,709 + HP15_55 0.25 -0.4
60,709 + HP15_55 0.25 +1.0
60,741 - HP15_55 0.29 +0.4
61,046 + HP15_55 0.67 -0.4
61,046 + HP15_55 0.67 +0.9
61,103 + HP15_55 0.74 +0.5
61,103 + HP15_55 0.74 +1.3
61,103 + HP15_55 0.74 -0.2
61,110 + HP15_55 0.75 -0.2
61,111 - HP15_55 0.75 +0.0
61,118 - HP15_55 0.76 +0.4
61,118 - HP15_55 0.76 +2.1
61,128 - HP15_55 0.77 +0.6
61,168 + HP15_55 0.82 +0.7
61,186 - HP15_55 0.84 -0.4
61,191 - HP15_55 0.85 -2.1
61,212 - HP15_55 0.87 +1.2
61,221 - HP15_55 0.89 +0.6
61,221 - HP15_55 0.89 +0.3
61,489 + HP15_56 0.14 -0.1
61,499 - HP15_56 0.14 -0.2
61,502 - HP15_56 0.15 +1.0
61,550 - HP15_56 0.19 -0.8
61,561 + HP15_56 0.20 +0.1
61,733 - HP15_56 0.35 -0.1
61,751 + HP15_56 0.37 +0.5
61,759 - HP15_56 0.38 -0.4
61,852 - HP15_56 0.46 -0.3
61,943 + HP15_56 0.54 -0.2
61,943 + HP15_56 0.54 +1.3
61,951 - HP15_56 0.55 -0.0
61,956 - HP15_56 0.55 +0.1
61,956 - HP15_56 0.55 +0.0
61,988 + HP15_56 0.58 +0.1
61,988 + HP15_56 0.58 +0.6
61,998 + HP15_56 0.59 +1.2
62,026 - HP15_56 0.61 -0.5
62,218 - HP15_56 0.78 -0.6
62,243 + HP15_56 0.81 +0.8
62,250 + HP15_56 0.81 +1.3
62,266 + HP15_56 0.83 +1.5
62,287 + HP15_56 0.84 -0.2
62,303 - HP15_56 0.86 +0.8

Or see this region's nucleotide sequence