Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g173 and HP15_p187g174 are separated by 15 nucleotides HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides HP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides
HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339
_p187g173
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196
_p187g176
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.145 kb on - strand at 181.215 kb on + strand at 181.259 kb on + strand at 181.283 kb on - strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.293 kb on - strand at 181.293 kb on - strand at 181.343 kb on + strand at 181.428 kb on - strand, within HP15_p187g174 at 181.465 kb on - strand, within HP15_p187g174 at 181.471 kb on + strand, within HP15_p187g174 at 181.484 kb on + strand, within HP15_p187g174 at 181.501 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.567 kb on + strand, within HP15_p187g174 at 181.570 kb on - strand, within HP15_p187g174 at 181.575 kb on + strand, within HP15_p187g174 at 181.667 kb on + strand, within HP15_p187g174 at 181.685 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.717 kb on + strand, within HP15_p187g174 at 181.726 kb on - strand, within HP15_p187g174 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175 at 182.497 kb on + strand, within HP15_p187g175 at 182.572 kb on + strand, within HP15_p187g175 at 182.578 kb on + strand, within HP15_p187g175 at 182.714 kb on + strand at 182.722 kb on - strand at 182.906 kb on + strand at 182.906 kb on + strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.924 kb on - strand at 182.937 kb on - strand at 182.969 kb on + strand at 182.983 kb on - strand, within HP15_p187g176 at 183.010 kb on + strand, within HP15_p187g176 at 183.010 kb on - strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.059 kb on + strand, within HP15_p187g176 at 183.067 kb on - strand, within HP15_p187g176 at 183.072 kb on + strand, within HP15_p187g176 at 183.101 kb on - strand, within HP15_p187g176 at 183.149 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.233 kb on - strand, within HP15_p187g176 at 183.269 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.277 kb on - strand, within HP15_p187g176 at 183.314 kb on - strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.328 kb on - strand, within HP15_p187g176 at 183.337 kb on - strand, within HP15_p187g176 at 183.380 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.424 kb on - strand, within HP15_p187g176 at 183.453 kb on - strand, within HP15_p187g176 at 183.468 kb on - strand, within HP15_p187g176 at 183.503 kb on - strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.582 kb on + strand, within HP15_p187g176 at 183.582 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.638 kb on + strand, within HP15_p187g176 at 183.663 kb on + strand, within HP15_p187g176
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 181,145 - -0.0 181,215 + +0.1 181,259 + -0.8 181,283 - +0.2 181,285 + +1.3 181,285 + -0.8 181,285 + +0.5 181,293 - +0.0 181,293 - -0.9 181,343 + +0.3 181,428 - HP15_p187g174 0.13 +2.1 181,465 - HP15_p187g174 0.20 -0.0 181,471 + HP15_p187g174 0.21 +0.2 181,484 + HP15_p187g174 0.23 -0.3 181,501 + HP15_p187g174 0.26 -0.0 181,547 + HP15_p187g174 0.35 +0.5 181,547 + HP15_p187g174 0.35 +0.1 181,555 - HP15_p187g174 0.36 -0.1 181,555 - HP15_p187g174 0.36 +0.7 181,567 + HP15_p187g174 0.38 +0.6 181,570 - HP15_p187g174 0.39 +0.1 181,575 + HP15_p187g174 0.40 -0.1 181,667 + HP15_p187g174 0.57 -0.1 181,685 - HP15_p187g174 0.60 -0.2 181,699 - HP15_p187g174 0.62 -0.3 181,699 - HP15_p187g174 0.62 -0.1 181,717 + HP15_p187g174 0.66 +0.7 181,726 - HP15_p187g174 0.67 +0.2 181,906 - -0.4 181,999 + +1.1 182,007 - -0.4 182,059 + -1.0 182,069 + +0.1 182,069 + +0.4 182,077 - -0.2 182,078 + +0.7 182,078 + -0.5 182,083 + +1.0 182,086 - +0.2 182,088 + +0.7 182,088 + +0.7 182,088 + -1.6 182,091 - +0.0 182,091 - -0.1 182,096 - +0.2 182,096 - -0.0 182,096 - +0.4 182,098 - +0.4 182,100 + +0.9 182,136 + -1.5 182,210 + HP15_p187g175 0.18 +1.0 182,210 + HP15_p187g175 0.18 +0.9 182,251 - HP15_p187g175 0.25 +1.1 182,497 + HP15_p187g175 0.66 +0.1 182,572 + HP15_p187g175 0.79 -0.4 182,578 + HP15_p187g175 0.80 +0.9 182,714 + -0.2 182,722 - +0.3 182,906 + +0.8 182,906 + +0.8 182,914 - +1.2 182,914 - +0.2 182,914 - +1.1 182,914 - +1.3 182,914 - +0.9 182,924 - -0.2 182,937 - +1.0 182,969 + +1.5 182,983 - HP15_p187g176 0.10 +0.6 183,010 + HP15_p187g176 0.12 +1.0 183,010 - HP15_p187g176 0.12 +0.5 183,011 + HP15_p187g176 0.12 +0.9 183,011 + HP15_p187g176 0.12 -0.1 183,054 + HP15_p187g176 0.15 +0.6 183,054 + HP15_p187g176 0.15 +0.8 183,059 + HP15_p187g176 0.16 +0.1 183,067 - HP15_p187g176 0.16 -0.9 183,072 + HP15_p187g176 0.17 -2.2 183,101 - HP15_p187g176 0.19 +0.4 183,149 + HP15_p187g176 0.22 +0.8 183,220 + HP15_p187g176 0.28 -0.4 183,220 + HP15_p187g176 0.28 +0.8 183,233 - HP15_p187g176 0.29 +0.7 183,269 + HP15_p187g176 0.31 +0.9 183,271 + HP15_p187g176 0.31 +2.4 183,271 + HP15_p187g176 0.31 +1.3 183,271 + HP15_p187g176 0.31 +0.9 183,277 - HP15_p187g176 0.32 +0.6 183,314 - HP15_p187g176 0.35 +0.7 183,320 + HP15_p187g176 0.35 +0.7 183,320 + HP15_p187g176 0.35 +0.5 183,328 - HP15_p187g176 0.36 +1.1 183,337 - HP15_p187g176 0.36 +0.4 183,380 + HP15_p187g176 0.39 +1.0 183,416 + HP15_p187g176 0.42 +0.9 183,416 + HP15_p187g176 0.42 +0.6 183,416 + HP15_p187g176 0.42 +0.9 183,424 - HP15_p187g176 0.43 -1.6 183,453 - HP15_p187g176 0.45 +0.9 183,468 - HP15_p187g176 0.46 +0.8 183,503 - HP15_p187g176 0.49 +0.8 183,534 + HP15_p187g176 0.51 -1.4 183,534 + HP15_p187g176 0.51 +1.1 183,582 + HP15_p187g176 0.54 +0.8 183,582 - HP15_p187g176 0.54 +0.8 183,592 - HP15_p187g176 0.55 -0.3 183,592 - HP15_p187g176 0.55 +1.0 183,638 + HP15_p187g176 0.59 -1.2 183,663 + HP15_p187g176 0.60 +0.9
Or see this region's nucleotide sequence