Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g49

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g47 and HP15_p42g48 are separated by 17 nucleotidesHP15_p42g48 and HP15_p42g49 overlap by 1 nucleotidesHP15_p42g49 and HP15_p42g50 overlap by 4 nucleotidesHP15_p42g50 and HP15_p42g51 are separated by 188 nucleotidesHP15_p42g51 and HP15_p42g52 are separated by 25 nucleotides HP15_p42g47: HP15_p42g47 - conjugal transfer protein TrbG/VirB9/CagX, at 36,363 to 37,268 _p42g47 HP15_p42g48: HP15_p42g48 - conjugal transfer, TrbF, at 37,286 to 38,068 _p42g48 HP15_p42g49: HP15_p42g49 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 38,068 to 40,608 _p42g49 HP15_p42g50: HP15_p42g50 - conjugal transfer protein TrbD-like protein, at 40,605 to 40,730 _p42g50 HP15_p42g51: HP15_p42g51 - prepilin, at 40,919 to 41,344 _p42g51 HP15_p42g52: HP15_p42g52 - type II secretion system protein E, at 41,370 to 42,329 _p42g52 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 37.095 kb on + strand, within HP15_p42g47at 37.113 kb on - strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.151 kb on + strand, within HP15_p42g47at 37.159 kb on - strand, within HP15_p42g47at 37.159 kb on - strand, within HP15_p42g47at 37.189 kb on - strandat 37.189 kb on - strandat 37.245 kb on - strandat 37.249 kb on - strandat 37.294 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.318 kb on + strandat 37.326 kb on - strandat 37.361 kb on - strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.371 kb on - strand, within HP15_p42g48at 37.373 kb on + strand, within HP15_p42g48at 37.390 kb on - strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.403 kb on + strand, within HP15_p42g48at 37.411 kb on - strand, within HP15_p42g48at 37.411 kb on - strand, within HP15_p42g48at 37.423 kb on + strand, within HP15_p42g48at 37.423 kb on + strand, within HP15_p42g48at 37.424 kb on + strand, within HP15_p42g48at 37.541 kb on - strand, within HP15_p42g48at 37.560 kb on + strand, within HP15_p42g48at 37.604 kb on + strand, within HP15_p42g48at 37.612 kb on - strand, within HP15_p42g48at 37.612 kb on - strand, within HP15_p42g48at 37.653 kb on - strand, within HP15_p42g48at 37.656 kb on + strand, within HP15_p42g48at 37.691 kb on - strand, within HP15_p42g48at 37.766 kb on - strand, within HP15_p42g48at 37.791 kb on - strand, within HP15_p42g48at 37.799 kb on + strand, within HP15_p42g48at 37.816 kb on + strand, within HP15_p42g48at 37.830 kb on + strand, within HP15_p42g48at 37.840 kb on + strand, within HP15_p42g48at 37.877 kb on + strand, within HP15_p42g48at 37.998 kb on + strandat 38.076 kb on + strandat 38.084 kb on - strandat 38.101 kb on + strandat 38.214 kb on + strandat 38.258 kb on + strandat 38.266 kb on - strandat 38.270 kb on + strandat 38.285 kb on - strandat 38.316 kb on + strandat 38.329 kb on + strand, within HP15_p42g49at 38.329 kb on + strand, within HP15_p42g49at 38.329 kb on + strand, within HP15_p42g49at 38.329 kb on + strand, within HP15_p42g49at 38.329 kb on + strand, within HP15_p42g49at 38.329 kb on + strand, within HP15_p42g49at 38.334 kb on + strand, within HP15_p42g49at 38.337 kb on - strand, within HP15_p42g49at 38.337 kb on - strand, within HP15_p42g49at 38.337 kb on - strand, within HP15_p42g49at 38.337 kb on - strand, within HP15_p42g49at 38.337 kb on - strand, within HP15_p42g49at 38.387 kb on + strand, within HP15_p42g49at 38.434 kb on + strand, within HP15_p42g49at 38.439 kb on + strand, within HP15_p42g49at 38.440 kb on + strand, within HP15_p42g49at 38.471 kb on + strand, within HP15_p42g49at 38.471 kb on + strand, within HP15_p42g49at 38.483 kb on + strand, within HP15_p42g49at 38.484 kb on - strand, within HP15_p42g49at 38.530 kb on + strand, within HP15_p42g49at 38.533 kb on + strand, within HP15_p42g49at 38.540 kb on + strand, within HP15_p42g49at 38.579 kb on - strand, within HP15_p42g49at 38.605 kb on + strand, within HP15_p42g49at 38.649 kb on - strand, within HP15_p42g49at 38.701 kb on + strand, within HP15_p42g49at 38.722 kb on + strand, within HP15_p42g49at 38.723 kb on - strand, within HP15_p42g49at 38.758 kb on - strand, within HP15_p42g49at 38.793 kb on + strand, within HP15_p42g49at 38.819 kb on - strand, within HP15_p42g49at 38.894 kb on + strand, within HP15_p42g49at 38.945 kb on + strand, within HP15_p42g49at 38.945 kb on + strand, within HP15_p42g49at 38.958 kb on + strand, within HP15_p42g49at 38.966 kb on - strand, within HP15_p42g49at 39.174 kb on + strand, within HP15_p42g49at 39.177 kb on - strand, within HP15_p42g49at 39.182 kb on - strand, within HP15_p42g49at 39.182 kb on - strand, within HP15_p42g49at 39.182 kb on - strand, within HP15_p42g49at 39.194 kb on - strand, within HP15_p42g49at 39.194 kb on - strand, within HP15_p42g49at 39.194 kb on - strand, within HP15_p42g49at 39.204 kb on - strand, within HP15_p42g49at 39.204 kb on - strand, within HP15_p42g49at 39.218 kb on + strand, within HP15_p42g49at 39.288 kb on + strand, within HP15_p42g49at 39.296 kb on + strand, within HP15_p42g49at 39.365 kb on - strand, within HP15_p42g49at 39.371 kb on - strand, within HP15_p42g49at 39.423 kb on + strand, within HP15_p42g49at 39.435 kb on + strand, within HP15_p42g49at 39.435 kb on + strand, within HP15_p42g49at 39.435 kb on + strand, within HP15_p42g49at 39.443 kb on - strand, within HP15_p42g49at 39.443 kb on - strand, within HP15_p42g49at 39.443 kb on - strand, within HP15_p42g49at 39.445 kb on + strand, within HP15_p42g49at 39.453 kb on - strand, within HP15_p42g49at 39.479 kb on + strand, within HP15_p42g49at 39.479 kb on + strand, within HP15_p42g49at 39.486 kb on + strand, within HP15_p42g49at 39.487 kb on - strand, within HP15_p42g49at 39.487 kb on - strand, within HP15_p42g49at 39.487 kb on - strand, within HP15_p42g49at 39.496 kb on + strand, within HP15_p42g49at 39.669 kb on - strand, within HP15_p42g49at 39.703 kb on + strand, within HP15_p42g49at 39.704 kb on + strand, within HP15_p42g49at 39.739 kb on - strand, within HP15_p42g49at 39.752 kb on + strand, within HP15_p42g49at 39.759 kb on - strand, within HP15_p42g49at 39.801 kb on + strand, within HP15_p42g49at 39.809 kb on - strand, within HP15_p42g49at 39.809 kb on - strand, within HP15_p42g49at 39.856 kb on - strand, within HP15_p42g49at 39.865 kb on + strand, within HP15_p42g49at 39.875 kb on + strand, within HP15_p42g49at 39.880 kb on + strand, within HP15_p42g49at 39.883 kb on - strand, within HP15_p42g49at 39.941 kb on - strand, within HP15_p42g49at 40.127 kb on + strand, within HP15_p42g49at 40.137 kb on + strand, within HP15_p42g49at 40.144 kb on + strand, within HP15_p42g49at 40.149 kb on + strand, within HP15_p42g49at 40.160 kb on + strand, within HP15_p42g49at 40.160 kb on + strand, within HP15_p42g49at 40.162 kb on + strand, within HP15_p42g49at 40.162 kb on - strand, within HP15_p42g49at 40.168 kb on - strand, within HP15_p42g49at 40.168 kb on - strand, within HP15_p42g49at 40.170 kb on - strand, within HP15_p42g49at 40.178 kb on - strand, within HP15_p42g49at 40.222 kb on + strand, within HP15_p42g49at 40.276 kb on + strand, within HP15_p42g49at 40.283 kb on + strand, within HP15_p42g49at 40.316 kb on - strand, within HP15_p42g49at 40.318 kb on + strand, within HP15_p42g49at 40.365 kb on - strandat 40.388 kb on + strandat 40.407 kb on + strandat 40.431 kb on + strandat 40.431 kb on + strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.444 kb on + strandat 40.694 kb on + strand, within HP15_p42g50at 40.717 kb on - strand, within HP15_p42g50at 40.717 kb on - strand, within HP15_p42g50at 40.717 kb on - strand, within HP15_p42g50at 40.753 kb on + strandat 40.763 kb on + strandat 40.763 kb on + strandat 40.778 kb on + strandat 40.778 kb on + strandat 40.786 kb on - strandat 40.786 kb on - strandat 40.826 kb on + strandat 40.826 kb on + strandat 40.828 kb on + strandat 40.836 kb on + strandat 40.893 kb on + strandat 40.893 kb on - strandat 40.924 kb on - strandat 40.959 kb on + strandat 40.967 kb on - strand, within HP15_p42g51at 40.980 kb on - strand, within HP15_p42g51at 41.021 kb on + strand, within HP15_p42g51at 41.055 kb on + strand, within HP15_p42g51at 41.099 kb on + strand, within HP15_p42g51at 41.114 kb on + strand, within HP15_p42g51at 41.163 kb on - strand, within HP15_p42g51at 41.164 kb on + strand, within HP15_p42g51at 41.164 kb on + strand, within HP15_p42g51at 41.164 kb on + strand, within HP15_p42g51at 41.164 kb on + strand, within HP15_p42g51at 41.169 kb on + strand, within HP15_p42g51at 41.172 kb on - strand, within HP15_p42g51at 41.172 kb on - strand, within HP15_p42g51at 41.215 kb on + strand, within HP15_p42g51at 41.223 kb on - strand, within HP15_p42g51at 41.249 kb on + strand, within HP15_p42g51at 41.249 kb on - strand, within HP15_p42g51at 41.259 kb on - strand, within HP15_p42g51at 41.265 kb on + strand, within HP15_p42g51at 41.287 kb on + strand, within HP15_p42g51at 41.287 kb on + strand, within HP15_p42g51at 41.287 kb on + strand, within HP15_p42g51at 41.292 kb on + strand, within HP15_p42g51at 41.292 kb on + strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.295 kb on - strand, within HP15_p42g51at 41.310 kb on + strandat 41.319 kb on - strandat 41.334 kb on - strandat 41.388 kb on + strandat 41.388 kb on + strandat 41.396 kb on - strandat 41.396 kb on - strandat 41.422 kb on - strandat 41.464 kb on + strandat 41.469 kb on + strand, within HP15_p42g52at 41.547 kb on + strand, within HP15_p42g52at 41.547 kb on + strand, within HP15_p42g52at 41.552 kb on + strand, within HP15_p42g52at 41.557 kb on + strand, within HP15_p42g52

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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37,095 + HP15_p42g47 0.81 +0.3
37,113 - HP15_p42g47 0.83 +0.1
37,151 + HP15_p42g47 0.87 +0.5
37,151 + HP15_p42g47 0.87 +0.5
37,151 + HP15_p42g47 0.87 +0.6
37,159 - HP15_p42g47 0.88 +0.5
37,159 - HP15_p42g47 0.88 +0.1
37,189 - +0.6
37,189 - +0.6
37,245 - +0.3
37,249 - -0.4
37,294 + +0.6
37,318 + +0.7
37,318 + +0.6
37,318 + -0.1
37,318 + +0.6
37,326 - +0.7
37,361 - -1.1
37,363 + +0.5
37,363 + +0.4
37,363 + +0.0
37,371 - HP15_p42g48 0.11 +0.3
37,373 + HP15_p42g48 0.11 +0.6
37,390 - HP15_p42g48 0.13 -1.5
37,403 + HP15_p42g48 0.15 +0.3
37,403 + HP15_p42g48 0.15 +0.6
37,403 + HP15_p42g48 0.15 +0.7
37,403 + HP15_p42g48 0.15 +0.3
37,403 + HP15_p42g48 0.15 +0.0
37,403 + HP15_p42g48 0.15 +1.0
37,403 + HP15_p42g48 0.15 +0.5
37,411 - HP15_p42g48 0.16 -0.6
37,411 - HP15_p42g48 0.16 -0.3
37,423 + HP15_p42g48 0.17 +0.7
37,423 + HP15_p42g48 0.17 -0.1
37,424 + HP15_p42g48 0.18 -0.3
37,541 - HP15_p42g48 0.33 -0.4
37,560 + HP15_p42g48 0.35 +0.4
37,604 + HP15_p42g48 0.41 -0.1
37,612 - HP15_p42g48 0.42 +0.0
37,612 - HP15_p42g48 0.42 -1.4
37,653 - HP15_p42g48 0.47 +0.1
37,656 + HP15_p42g48 0.47 +0.3
37,691 - HP15_p42g48 0.52 +0.2
37,766 - HP15_p42g48 0.61 +0.1
37,791 - HP15_p42g48 0.64 +0.3
37,799 + HP15_p42g48 0.66 +1.1
37,816 + HP15_p42g48 0.68 +0.5
37,830 + HP15_p42g48 0.69 +0.5
37,840 + HP15_p42g48 0.71 -0.4
37,877 + HP15_p42g48 0.75 +0.2
37,998 + +0.0
38,076 + -0.4
38,084 - +0.4
38,101 + +0.2
38,214 + +0.8
38,258 + +0.3
38,266 - +0.6
38,270 + +0.5
38,285 - +0.6
38,316 + +0.7
38,329 + HP15_p42g49 0.10 +0.3
38,329 + HP15_p42g49 0.10 +0.5
38,329 + HP15_p42g49 0.10 +0.7
38,329 + HP15_p42g49 0.10 +0.4
38,329 + HP15_p42g49 0.10 -0.4
38,329 + HP15_p42g49 0.10 +0.2
38,334 + HP15_p42g49 0.10 +1.2
38,337 - HP15_p42g49 0.11 -0.1
38,337 - HP15_p42g49 0.11 -0.2
38,337 - HP15_p42g49 0.11 +0.5
38,337 - HP15_p42g49 0.11 +1.1
38,337 - HP15_p42g49 0.11 +0.2
38,387 + HP15_p42g49 0.13 +0.4
38,434 + HP15_p42g49 0.14 +0.0
38,439 + HP15_p42g49 0.15 -0.2
38,440 + HP15_p42g49 0.15 +0.8
38,471 + HP15_p42g49 0.16 +0.5
38,471 + HP15_p42g49 0.16 +0.5
38,483 + HP15_p42g49 0.16 +0.1
38,484 - HP15_p42g49 0.16 +0.8
38,530 + HP15_p42g49 0.18 -0.0
38,533 + HP15_p42g49 0.18 +0.1
38,540 + HP15_p42g49 0.19 +0.5
38,579 - HP15_p42g49 0.20 +0.6
38,605 + HP15_p42g49 0.21 +0.5
38,649 - HP15_p42g49 0.23 +0.2
38,701 + HP15_p42g49 0.25 +0.7
38,722 + HP15_p42g49 0.26 +0.4
38,723 - HP15_p42g49 0.26 -0.0
38,758 - HP15_p42g49 0.27 +0.5
38,793 + HP15_p42g49 0.29 +1.0
38,819 - HP15_p42g49 0.30 -2.1
38,894 + HP15_p42g49 0.33 +0.3
38,945 + HP15_p42g49 0.35 -0.1
38,945 + HP15_p42g49 0.35 +0.7
38,958 + HP15_p42g49 0.35 +0.5
38,966 - HP15_p42g49 0.35 +1.3
39,174 + HP15_p42g49 0.44 +0.3
39,177 - HP15_p42g49 0.44 +0.4
39,182 - HP15_p42g49 0.44 +0.4
39,182 - HP15_p42g49 0.44 -0.1
39,182 - HP15_p42g49 0.44 +0.4
39,194 - HP15_p42g49 0.44 +1.1
39,194 - HP15_p42g49 0.44 -0.0
39,194 - HP15_p42g49 0.44 +0.2
39,204 - HP15_p42g49 0.45 +0.1
39,204 - HP15_p42g49 0.45 +0.3
39,218 + HP15_p42g49 0.45 -0.2
39,288 + HP15_p42g49 0.48 +0.1
39,296 + HP15_p42g49 0.48 +0.5
39,365 - HP15_p42g49 0.51 -0.5
39,371 - HP15_p42g49 0.51 +0.2
39,423 + HP15_p42g49 0.53 +0.3
39,435 + HP15_p42g49 0.54 +0.3
39,435 + HP15_p42g49 0.54 +0.6
39,435 + HP15_p42g49 0.54 -1.2
39,443 - HP15_p42g49 0.54 +0.0
39,443 - HP15_p42g49 0.54 -0.2
39,443 - HP15_p42g49 0.54 +0.0
39,445 + HP15_p42g49 0.54 -0.5
39,453 - HP15_p42g49 0.55 +0.7
39,479 + HP15_p42g49 0.56 +0.4
39,479 + HP15_p42g49 0.56 +0.1
39,486 + HP15_p42g49 0.56 +0.3
39,487 - HP15_p42g49 0.56 +0.3
39,487 - HP15_p42g49 0.56 -0.6
39,487 - HP15_p42g49 0.56 +0.0
39,496 + HP15_p42g49 0.56 +0.3
39,669 - HP15_p42g49 0.63 +1.5
39,703 + HP15_p42g49 0.64 -1.8
39,704 + HP15_p42g49 0.64 +0.8
39,739 - HP15_p42g49 0.66 +0.4
39,752 + HP15_p42g49 0.66 +1.5
39,759 - HP15_p42g49 0.67 +0.4
39,801 + HP15_p42g49 0.68 +0.6
39,809 - HP15_p42g49 0.69 +0.3
39,809 - HP15_p42g49 0.69 +0.3
39,856 - HP15_p42g49 0.70 +0.4
39,865 + HP15_p42g49 0.71 +0.3
39,875 + HP15_p42g49 0.71 +0.4
39,880 + HP15_p42g49 0.71 +0.4
39,883 - HP15_p42g49 0.71 +0.6
39,941 - HP15_p42g49 0.74 +1.1
40,127 + HP15_p42g49 0.81 +0.3
40,137 + HP15_p42g49 0.81 +0.8
40,144 + HP15_p42g49 0.82 +0.1
40,149 + HP15_p42g49 0.82 +0.4
40,160 + HP15_p42g49 0.82 +0.8
40,160 + HP15_p42g49 0.82 +0.2
40,162 + HP15_p42g49 0.82 -0.1
40,162 - HP15_p42g49 0.82 -0.0
40,168 - HP15_p42g49 0.83 -1.2
40,168 - HP15_p42g49 0.83 +0.5
40,170 - HP15_p42g49 0.83 +0.7
40,178 - HP15_p42g49 0.83 +0.5
40,222 + HP15_p42g49 0.85 +0.1
40,276 + HP15_p42g49 0.87 +0.5
40,283 + HP15_p42g49 0.87 +0.7
40,316 - HP15_p42g49 0.88 -0.3
40,318 + HP15_p42g49 0.89 +0.0
40,365 - +0.5
40,388 + +2.1
40,407 + +0.2
40,431 + +0.4
40,431 + +0.5
40,439 - +0.1
40,439 - +0.1
40,439 - +0.5
40,444 + +0.4
40,694 + HP15_p42g50 0.71 +0.4
40,717 - HP15_p42g50 0.89 -0.5
40,717 - HP15_p42g50 0.89 -0.6
40,717 - HP15_p42g50 0.89 -0.4
40,753 + -0.4
40,763 + -0.1
40,763 + +0.0
40,778 + +0.0
40,778 + +0.1
40,786 - -0.0
40,786 - -1.5
40,826 + -0.0
40,826 + +0.5
40,828 + +0.4
40,836 + -0.0
40,893 + +0.4
40,893 - +0.4
40,924 - -1.1
40,959 + +0.4
40,967 - HP15_p42g51 0.11 -1.2
40,980 - HP15_p42g51 0.14 -0.7
41,021 + HP15_p42g51 0.24 +0.5
41,055 + HP15_p42g51 0.32 +0.3
41,099 + HP15_p42g51 0.42 -0.7
41,114 + HP15_p42g51 0.46 +0.2
41,163 - HP15_p42g51 0.57 +1.0
41,164 + HP15_p42g51 0.58 +0.1
41,164 + HP15_p42g51 0.58 +0.4
41,164 + HP15_p42g51 0.58 +0.3
41,164 + HP15_p42g51 0.58 -0.9
41,169 + HP15_p42g51 0.59 +0.0
41,172 - HP15_p42g51 0.59 +0.5
41,172 - HP15_p42g51 0.59 +0.4
41,215 + HP15_p42g51 0.69 +0.2
41,223 - HP15_p42g51 0.71 +0.5
41,249 + HP15_p42g51 0.77 -0.6
41,249 - HP15_p42g51 0.77 +0.1
41,259 - HP15_p42g51 0.80 -0.0
41,265 + HP15_p42g51 0.81 -0.1
41,287 + HP15_p42g51 0.86 +0.3
41,287 + HP15_p42g51 0.86 -0.3
41,287 + HP15_p42g51 0.86 +0.3
41,292 + HP15_p42g51 0.88 -0.0
41,292 + HP15_p42g51 0.88 +1.0
41,295 - HP15_p42g51 0.88 +0.6
41,295 - HP15_p42g51 0.88 +0.5
41,295 - HP15_p42g51 0.88 -0.5
41,295 - HP15_p42g51 0.88 -0.4
41,295 - HP15_p42g51 0.88 +1.0
41,295 - HP15_p42g51 0.88 +0.5
41,295 - HP15_p42g51 0.88 +0.2
41,295 - HP15_p42g51 0.88 +0.3
41,310 + +0.1
41,319 - +1.2
41,334 - +0.3
41,388 + +0.6
41,388 + -0.4
41,396 - -0.5
41,396 - +0.1
41,422 - -0.7
41,464 + +0.1
41,469 + HP15_p42g52 0.10 +0.8
41,547 + HP15_p42g52 0.18 +0.2
41,547 + HP15_p42g52 0.18 +0.2
41,552 + HP15_p42g52 0.19 +0.4
41,557 + HP15_p42g52 0.19 +0.2

Or see this region's nucleotide sequence