Strain Fitness in Marinobacter adhaerens HP15 around HP15_4180

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4179 and HP15_4180 are separated by 2 nucleotides HP15_4179: HP15_4179 - methylcrotonyl-CoA carboxylase, alpha subunit, at 4,419,184 to 4,421,178 _4179 HP15_4180: HP15_4180 - enoyl-CoA hydratase/isomerase, at 4,421,181 to 4,421,888 _4180 Position (kb) 4421 4422Strain fitness (log2 ratio) -1 0 1 2 3at 4420.372 kb on + strand, within HP15_4179at 4420.485 kb on + strand, within HP15_4179at 4420.773 kb on + strand, within HP15_4179at 4420.971 kb on - strand, within HP15_4179at 4421.063 kb on + strandat 4421.068 kb on + strandat 4421.451 kb on + strand, within HP15_4180at 4421.643 kb on + strand, within HP15_4180at 4421.643 kb on + strand, within HP15_4180at 4421.668 kb on - strand, within HP15_4180at 4421.780 kb on + strand, within HP15_4180at 4421.791 kb on + strand, within HP15_4180

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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4,420,372 + HP15_4179 0.60 -0.7
4,420,485 + HP15_4179 0.65 +0.5
4,420,773 + HP15_4179 0.80 -0.1
4,420,971 - HP15_4179 0.90 -0.5
4,421,063 + -0.2
4,421,068 + +1.1
4,421,451 + HP15_4180 0.38 +0.6
4,421,643 + HP15_4180 0.65 +3.3
4,421,643 + HP15_4180 0.65 -0.5
4,421,668 - HP15_4180 0.69 -0.1
4,421,780 + HP15_4180 0.85 +1.3
4,421,791 + HP15_4180 0.86 +0.9

Or see this region's nucleotide sequence