Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4175 and HP15_4176 are separated by 361 nucleotides HP15_4176 and HP15_4177 are separated by 80 nucleotides
HP15_4175: HP15_4175 - formate dehydrogenase, subunit FdhD, at 4,413,319 to 4,414,173
_4175
HP15_4176: HP15_4176 - electron-transferring-flavoprotein dehydrogenase, at 4,414,535 to 4,416,187
_4176
HP15_4177: HP15_4177 - acetyl-CoA synthetase, at 4,416,268 to 4,418,256
_4177
Position (kb) 4414
4415
4416
4417 Strain fitness (log2 ratio) -2
-1
0
1 at 4413.562 kb on - strand, within HP15_4175 at 4413.681 kb on - strand, within HP15_4175 at 4413.692 kb on - strand, within HP15_4175 at 4413.714 kb on + strand, within HP15_4175 at 4413.714 kb on + strand, within HP15_4175 at 4413.734 kb on + strand, within HP15_4175 at 4413.759 kb on - strand, within HP15_4175 at 4413.760 kb on - strand, within HP15_4175 at 4413.812 kb on + strand, within HP15_4175 at 4413.812 kb on + strand, within HP15_4175 at 4413.820 kb on - strand, within HP15_4175 at 4413.820 kb on - strand, within HP15_4175 at 4413.853 kb on + strand, within HP15_4175 at 4413.878 kb on - strand, within HP15_4175 at 4413.925 kb on + strand, within HP15_4175 at 4413.926 kb on - strand, within HP15_4175 at 4413.968 kb on - strand, within HP15_4175 at 4414.006 kb on - strand, within HP15_4175 at 4414.013 kb on + strand, within HP15_4175 at 4414.024 kb on + strand, within HP15_4175 at 4414.047 kb on - strand, within HP15_4175 at 4414.081 kb on + strand, within HP15_4175 at 4414.102 kb on + strand at 4414.112 kb on + strand at 4414.265 kb on + strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.328 kb on - strand at 4414.365 kb on + strand at 4414.411 kb on - strand at 4414.422 kb on + strand at 4414.474 kb on + strand at 4414.488 kb on + strand at 4414.496 kb on - strand at 4414.496 kb on - strand at 4414.532 kb on + strand at 4414.966 kb on + strand, within HP15_4176 at 4415.667 kb on - strand, within HP15_4176 at 4416.320 kb on + strand at 4416.325 kb on + strand at 4416.333 kb on - strand at 4416.333 kb on - strand at 4416.391 kb on - strand at 4416.414 kb on + strand at 4416.450 kb on + strand at 4416.597 kb on + strand, within HP15_4177 at 4416.613 kb on - strand, within HP15_4177 at 4416.654 kb on + strand, within HP15_4177 at 4416.711 kb on + strand, within HP15_4177 at 4416.735 kb on + strand, within HP15_4177 at 4416.737 kb on + strand, within HP15_4177 at 4416.754 kb on - strand, within HP15_4177 at 4416.769 kb on - strand, within HP15_4177 at 4416.832 kb on - strand, within HP15_4177 at 4416.838 kb on + strand, within HP15_4177 at 4416.846 kb on - strand, within HP15_4177 at 4416.872 kb on + strand, within HP15_4177
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 4,413,562 - HP15_4175 0.28 +0.5 4,413,681 - HP15_4175 0.42 +0.0 4,413,692 - HP15_4175 0.44 +0.5 4,413,714 + HP15_4175 0.46 -0.1 4,413,714 + HP15_4175 0.46 -0.2 4,413,734 + HP15_4175 0.49 -0.3 4,413,759 - HP15_4175 0.51 -0.0 4,413,760 - HP15_4175 0.52 +1.2 4,413,812 + HP15_4175 0.58 +0.1 4,413,812 + HP15_4175 0.58 -0.5 4,413,820 - HP15_4175 0.59 -0.1 4,413,820 - HP15_4175 0.59 -0.6 4,413,853 + HP15_4175 0.62 -0.1 4,413,878 - HP15_4175 0.65 -0.1 4,413,925 + HP15_4175 0.71 +0.2 4,413,926 - HP15_4175 0.71 -0.3 4,413,968 - HP15_4175 0.76 -0.1 4,414,006 - HP15_4175 0.80 +1.3 4,414,013 + HP15_4175 0.81 -0.5 4,414,024 + HP15_4175 0.82 +0.3 4,414,047 - HP15_4175 0.85 +0.3 4,414,081 + HP15_4175 0.89 -0.1 4,414,102 + +1.1 4,414,112 + +0.8 4,414,265 + -0.1 4,414,328 - -1.2 4,414,328 - +0.5 4,414,328 - -0.4 4,414,328 - +0.4 4,414,328 - -1.3 4,414,365 + +0.9 4,414,411 - -0.2 4,414,422 + -0.2 4,414,474 + +0.6 4,414,488 + +0.6 4,414,496 - +0.6 4,414,496 - -0.6 4,414,532 + +0.9 4,414,966 + HP15_4176 0.26 +0.6 4,415,667 - HP15_4176 0.68 +0.4 4,416,320 + +0.1 4,416,325 + +0.3 4,416,333 - +0.7 4,416,333 - +0.4 4,416,391 - +0.3 4,416,414 + -1.2 4,416,450 + +0.7 4,416,597 + HP15_4177 0.17 +0.9 4,416,613 - HP15_4177 0.17 +0.2 4,416,654 + HP15_4177 0.19 +0.2 4,416,711 + HP15_4177 0.22 -0.1 4,416,735 + HP15_4177 0.23 -0.3 4,416,737 + HP15_4177 0.24 -0.9 4,416,754 - HP15_4177 0.24 -1.0 4,416,769 - HP15_4177 0.25 -2.3 4,416,832 - HP15_4177 0.28 +0.5 4,416,838 + HP15_4177 0.29 -0.3 4,416,846 - HP15_4177 0.29 +0.1 4,416,872 + HP15_4177 0.30 +0.2
Or see this region's nucleotide sequence