Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3973 and HP15_3974 overlap by 14 nucleotides HP15_3974 and HP15_3975 overlap by 4 nucleotides HP15_3975 and HP15_3976 are separated by 87 nucleotides
HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427
_3973
HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196
_3974
HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813
_3975
HP15_3976: HP15_3976 - protein containing diguanylate cyclase, predicted domains, at 4,205,901 to 4,207,421
_3976
Position (kb) 4204
4205
4206 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4203.472 kb on + strand, within HP15_3973 at 4203.536 kb on + strand, within HP15_3973 at 4203.567 kb on + strand, within HP15_3973 at 4203.596 kb on + strand, within HP15_3973 at 4203.602 kb on + strand, within HP15_3973 at 4203.604 kb on - strand, within HP15_3973 at 4203.649 kb on - strand, within HP15_3973 at 4203.792 kb on + strand, within HP15_3973 at 4203.835 kb on + strand, within HP15_3973 at 4203.911 kb on + strand, within HP15_3973 at 4203.971 kb on - strand, within HP15_3973 at 4204.020 kb on - strand, within HP15_3973 at 4204.039 kb on - strand, within HP15_3973 at 4204.039 kb on - strand, within HP15_3973 at 4204.066 kb on + strand, within HP15_3973 at 4204.148 kb on - strand, within HP15_3973 at 4204.222 kb on - strand at 4204.378 kb on + strand at 4204.640 kb on + strand, within HP15_3974 at 4204.648 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.660 kb on - strand, within HP15_3974 at 4204.665 kb on - strand, within HP15_3974 at 4204.693 kb on + strand, within HP15_3974 at 4204.715 kb on - strand, within HP15_3974 at 4204.789 kb on + strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.797 kb on - strand, within HP15_3974 at 4204.810 kb on + strand, within HP15_3974 at 4204.859 kb on + strand, within HP15_3974 at 4204.897 kb on + strand, within HP15_3974 at 4204.905 kb on - strand, within HP15_3974 at 4204.928 kb on + strand, within HP15_3974 at 4204.956 kb on - strand, within HP15_3974 at 4204.978 kb on + strand, within HP15_3974 at 4205.001 kb on - strand, within HP15_3974 at 4205.126 kb on - strand at 4205.185 kb on - strand at 4205.253 kb on + strand at 4205.331 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.410 kb on + strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.418 kb on - strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.465 kb on + strand, within HP15_3975 at 4205.549 kb on - strand, within HP15_3975 at 4205.690 kb on + strand, within HP15_3975 at 4205.696 kb on + strand, within HP15_3975 at 4205.704 kb on - strand, within HP15_3975 at 4205.787 kb on + strand at 4205.787 kb on + strand at 4205.846 kb on - strand at 4205.887 kb on + strand at 4206.119 kb on + strand, within HP15_3976
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 4,203,472 + HP15_3973 0.54 +0.1 4,203,536 + HP15_3973 0.57 -0.1 4,203,567 + HP15_3973 0.59 -1.4 4,203,596 + HP15_3973 0.60 +0.1 4,203,602 + HP15_3973 0.60 -0.5 4,203,604 - HP15_3973 0.61 +1.5 4,203,649 - HP15_3973 0.63 -0.5 4,203,792 + HP15_3973 0.70 +0.3 4,203,835 + HP15_3973 0.72 -0.7 4,203,911 + HP15_3973 0.75 -0.5 4,203,971 - HP15_3973 0.78 -0.6 4,204,020 - HP15_3973 0.80 -0.5 4,204,039 - HP15_3973 0.81 +1.1 4,204,039 - HP15_3973 0.81 +2.8 4,204,066 + HP15_3973 0.83 +0.6 4,204,148 - HP15_3973 0.87 +0.2 4,204,222 - -0.0 4,204,378 + +0.8 4,204,640 + HP15_3974 0.29 -0.1 4,204,648 - HP15_3974 0.30 +0.5 4,204,660 - HP15_3974 0.31 -0.2 4,204,660 - HP15_3974 0.31 +0.0 4,204,665 - HP15_3974 0.32 -0.4 4,204,693 + HP15_3974 0.36 -0.3 4,204,715 - HP15_3974 0.38 +0.9 4,204,789 + HP15_3974 0.48 +0.2 4,204,797 - HP15_3974 0.49 +0.9 4,204,797 - HP15_3974 0.49 +0.2 4,204,810 + HP15_3974 0.51 -0.1 4,204,859 + HP15_3974 0.57 -2.4 4,204,897 + HP15_3974 0.62 +1.2 4,204,905 - HP15_3974 0.63 -1.4 4,204,928 + HP15_3974 0.66 +0.0 4,204,956 - HP15_3974 0.69 -1.1 4,204,978 + HP15_3974 0.72 -0.3 4,205,001 - HP15_3974 0.75 -0.4 4,205,126 - -0.4 4,205,185 - -0.9 4,205,253 + -0.2 4,205,331 + HP15_3975 0.22 -0.4 4,205,410 + HP15_3975 0.35 -0.6 4,205,410 + HP15_3975 0.35 -1.4 4,205,410 + HP15_3975 0.35 -0.2 4,205,410 + HP15_3975 0.35 +2.1 4,205,410 + HP15_3975 0.35 -0.3 4,205,410 + HP15_3975 0.35 -0.5 4,205,418 - HP15_3975 0.36 -0.0 4,205,418 - HP15_3975 0.36 -0.4 4,205,418 - HP15_3975 0.36 -0.8 4,205,465 + HP15_3975 0.44 +0.2 4,205,465 + HP15_3975 0.44 -0.6 4,205,549 - HP15_3975 0.57 +0.2 4,205,690 + HP15_3975 0.80 +1.2 4,205,696 + HP15_3975 0.81 +0.7 4,205,704 - HP15_3975 0.82 -0.1 4,205,787 + -0.0 4,205,787 + +0.2 4,205,846 - -0.6 4,205,887 + +1.4 4,206,119 + HP15_3976 0.14 +0.4
Or see this region's nucleotide sequence