Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3193 and HP15_3194 are separated by 27 nucleotides HP15_3194 and HP15_3195 are separated by 12 nucleotides HP15_3195 and HP15_3196 are separated by 88 nucleotides HP15_3196 and HP15_3197 are separated by 11 nucleotides
HP15_3193: HP15_3193 - ubiquinone biosynthesis protein UbiB, at 3,347,770 to 3,349,413
_3193
HP15_3194: HP15_3194 - phosphoribosyl-AMP cyclohydrolase, at 3,349,441 to 3,349,857
_3194
HP15_3195: HP15_3195 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) , at 3,349,870 to 3,350,199
_3195
HP15_3196: HP15_3196 - twin-arginine translocation protein TatA/E, at 3,350,288 to 3,350,527
_3196
HP15_3197: HP15_3197 - twin-arginine translocation subgoup, at 3,350,539 to 3,351,012
_3197
Position (kb)
3349
3350 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3349.525 kb on + strand, within HP15_3194 at 3349.609 kb on + strand, within HP15_3194 at 3349.658 kb on + strand, within HP15_3194 at 3349.830 kb on + strand at 3349.840 kb on + strand at 3349.851 kb on + strand at 3349.934 kb on + strand, within HP15_3195 at 3349.964 kb on - strand, within HP15_3195 at 3350.056 kb on - strand, within HP15_3195 at 3350.201 kb on + strand at 3350.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 3,349,525 + HP15_3194 0.20 -3.5 3,349,609 + HP15_3194 0.40 -1.9 3,349,658 + HP15_3194 0.52 -2.9 3,349,830 + +0.8 3,349,840 + -0.0 3,349,851 + -0.3 3,349,934 + HP15_3195 0.19 -5.8 3,349,964 - HP15_3195 0.28 -5.1 3,350,056 - HP15_3195 0.56 -6.3 3,350,201 + -0.8 3,350,523 + -0.5
Or see this region's nucleotide sequence