Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2934 and HP15_2935 are separated by 8 nucleotides HP15_2935 and HP15_2936 overlap by 4 nucleotides
HP15_2934: HP15_2934 - protein YeaH, at 3,075,217 to 3,076,506
_2934
HP15_2935: HP15_2935 - SpoVR family protein, at 3,076,515 to 3,078,062
_2935
HP15_2936: HP15_2936 - periplasmic sensor signal transduction histidine kinase, at 3,078,059 to 3,079,396
_2936
Position (kb)
3076
3077
3078
3079 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3075.517 kb on - strand, within HP15_2934 at 3075.520 kb on + strand, within HP15_2934 at 3075.547 kb on - strand, within HP15_2934 at 3075.605 kb on + strand, within HP15_2934 at 3075.710 kb on - strand, within HP15_2934 at 3075.774 kb on + strand, within HP15_2934 at 3075.850 kb on - strand, within HP15_2934 at 3076.124 kb on - strand, within HP15_2934 at 3076.177 kb on + strand, within HP15_2934 at 3076.216 kb on - strand, within HP15_2934 at 3076.304 kb on + strand, within HP15_2934 at 3076.336 kb on + strand, within HP15_2934 at 3076.689 kb on - strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.822 kb on + strand, within HP15_2935 at 3076.861 kb on - strand, within HP15_2935 at 3076.916 kb on + strand, within HP15_2935 at 3077.222 kb on + strand, within HP15_2935 at 3077.233 kb on + strand, within HP15_2935 at 3077.241 kb on - strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935 at 3077.735 kb on + strand, within HP15_2935 at 3077.754 kb on + strand, within HP15_2935 at 3077.787 kb on - strand, within HP15_2935 at 3077.990 kb on - strand at 3077.996 kb on - strand at 3078.082 kb on + strand at 3078.201 kb on + strand, within HP15_2936 at 3078.272 kb on + strand, within HP15_2936 at 3078.428 kb on - strand, within HP15_2936 at 3078.557 kb on + strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3079.023 kb on - strand, within HP15_2936 at 3079.045 kb on + strand, within HP15_2936
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 3,075,517 - HP15_2934 0.23 +0.9 3,075,520 + HP15_2934 0.23 +0.1 3,075,547 - HP15_2934 0.26 +0.0 3,075,605 + HP15_2934 0.30 +0.1 3,075,710 - HP15_2934 0.38 +1.3 3,075,774 + HP15_2934 0.43 +0.5 3,075,850 - HP15_2934 0.49 +0.5 3,076,124 - HP15_2934 0.70 +0.7 3,076,177 + HP15_2934 0.74 -0.1 3,076,216 - HP15_2934 0.77 +0.5 3,076,304 + HP15_2934 0.84 +0.3 3,076,336 + HP15_2934 0.87 +0.8 3,076,689 - HP15_2935 0.11 -1.0 3,076,822 + HP15_2935 0.20 -0.6 3,076,822 + HP15_2935 0.20 +0.3 3,076,822 + HP15_2935 0.20 -0.4 3,076,822 + HP15_2935 0.20 -1.2 3,076,861 - HP15_2935 0.22 +0.6 3,076,916 + HP15_2935 0.26 +0.3 3,077,222 + HP15_2935 0.46 -0.1 3,077,233 + HP15_2935 0.46 -0.0 3,077,241 - HP15_2935 0.47 +0.2 3,077,496 + HP15_2935 0.63 -0.1 3,077,496 + HP15_2935 0.63 -2.9 3,077,735 + HP15_2935 0.79 +0.6 3,077,754 + HP15_2935 0.80 -0.2 3,077,787 - HP15_2935 0.82 +0.1 3,077,990 - +0.1 3,077,996 - +0.2 3,078,082 + -0.1 3,078,201 + HP15_2936 0.11 -0.0 3,078,272 + HP15_2936 0.16 -0.2 3,078,428 - HP15_2936 0.28 +0.3 3,078,557 + HP15_2936 0.37 -0.8 3,078,873 - HP15_2936 0.61 -1.3 3,078,873 - HP15_2936 0.61 -0.1 3,079,023 - HP15_2936 0.72 -0.2 3,079,045 + HP15_2936 0.74 -0.6
Or see this region's nucleotide sequence