Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_295 and HP15_296 are separated by 267 nucleotides HP15_296 and HP15_297 are separated by 95 nucleotides HP15_297 and HP15_298 are separated by 3 nucleotides HP15_298 and HP15_299 are separated by 81 nucleotides
HP15_295: HP15_295 - fibronectin, type III domain protein, at 287,493 to 287,984
_295
HP15_296: HP15_296 - conserved hypothetical protein, at 288,252 to 288,674
_296
HP15_297: HP15_297 - ATPase components of ABC transporters with duplicated ATPase domains, at 288,770 to 289,423
_297
HP15_298: HP15_298 - orotate phosphoribosyltransferase, at 289,427 to 290,065
_298
HP15_299: HP15_299 - exodeoxyribonuclease III Xth, at 290,147 to 290,953
_299
Position (kb) 288
289
290 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 287.852 kb on + strand, within HP15_295 at 288.205 kb on + strand at 288.218 kb on - strand at 288.260 kb on + strand at 288.268 kb on - strand at 288.348 kb on - strand, within HP15_296 at 288.384 kb on + strand, within HP15_296 at 288.388 kb on + strand, within HP15_296 at 288.519 kb on + strand, within HP15_296 at 288.615 kb on + strand, within HP15_296 at 288.615 kb on + strand, within HP15_296 at 288.648 kb on + strand at 288.653 kb on + strand at 288.780 kb on + strand at 288.780 kb on + strand at 288.788 kb on - strand at 288.788 kb on - strand at 288.944 kb on - strand, within HP15_297 at 289.003 kb on - strand, within HP15_297 at 289.059 kb on - strand, within HP15_297 at 289.316 kb on + strand, within HP15_297 at 289.324 kb on - strand, within HP15_297 at 289.376 kb on + strand at 289.396 kb on - strand at 289.530 kb on - strand, within HP15_298 at 289.710 kb on + strand, within HP15_298 at 289.932 kb on - strand, within HP15_298 at 289.992 kb on + strand, within HP15_298
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 287,852 + HP15_295 0.73 +0.1 288,205 + +0.9 288,218 - +0.7 288,260 + +0.5 288,268 - +0.0 288,348 - HP15_296 0.23 -0.0 288,384 + HP15_296 0.31 +2.1 288,388 + HP15_296 0.32 +0.1 288,519 + HP15_296 0.63 -0.0 288,615 + HP15_296 0.86 +0.8 288,615 + HP15_296 0.86 +1.0 288,648 + -2.1 288,653 + -0.2 288,780 + +0.9 288,780 + +0.1 288,788 - -0.4 288,788 - +0.0 288,944 - HP15_297 0.27 -0.2 289,003 - HP15_297 0.36 +1.4 289,059 - HP15_297 0.44 -0.0 289,316 + HP15_297 0.83 +0.7 289,324 - HP15_297 0.85 +0.6 289,376 + +0.8 289,396 - +0.6 289,530 - HP15_298 0.16 -6.3 289,710 + HP15_298 0.44 -7.2 289,932 - HP15_298 0.79 -4.1 289,992 + HP15_298 0.88 -4.7
Or see this region's nucleotide sequence