Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2612 and HP15_2613 are separated by 78 nucleotides HP15_2613 and HP15_2614 are separated by 168 nucleotides HP15_2614 and HP15_2615 overlap by 4 nucleotides HP15_2615 and HP15_2616 are separated by 113 nucleotides
HP15_2612: HP15_2612 - lipoprotein, at 2,764,499 to 2,765,029
_2612
HP15_2613: HP15_2613 - protein belonging to uncharacterized protein family UPF0029, at 2,765,108 to 2,765,713
_2613
HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204
_2614
HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887
_2615
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
Position (kb)
2765
2766
2767
2768 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2764.986 kb on + strand at 2764.994 kb on - strand at 2764.994 kb on - strand at 2765.067 kb on + strand at 2765.160 kb on + strand at 2765.232 kb on + strand, within HP15_2613 at 2765.345 kb on + strand, within HP15_2613 at 2765.347 kb on + strand, within HP15_2613 at 2765.374 kb on + strand, within HP15_2613 at 2765.382 kb on - strand, within HP15_2613 at 2765.478 kb on + strand, within HP15_2613 at 2765.546 kb on - strand, within HP15_2613 at 2765.571 kb on + strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.677 kb on + strand at 2765.723 kb on + strand at 2765.731 kb on - strand at 2765.768 kb on - strand at 2766.150 kb on + strand, within HP15_2614 at 2766.238 kb on + strand, within HP15_2614 at 2766.238 kb on + strand, within HP15_2614 at 2766.246 kb on - strand, within HP15_2614 at 2766.567 kb on + strand, within HP15_2614 at 2766.575 kb on - strand, within HP15_2614 at 2767.094 kb on + strand at 2767.175 kb on + strand at 2767.227 kb on - strand at 2767.292 kb on - strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.307 kb on - strand, within HP15_2615 at 2767.320 kb on - strand, within HP15_2615 at 2767.472 kb on + strand, within HP15_2615 at 2767.722 kb on + strand, within HP15_2615 at 2767.758 kb on - strand, within HP15_2615 at 2767.767 kb on + strand, within HP15_2615 at 2767.832 kb on - strand at 2767.832 kb on - strand at 2767.990 kb on - strand at 2767.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 2,764,986 + -0.1 2,764,994 - -0.1 2,764,994 - -0.1 2,765,067 + -0.3 2,765,160 + +0.4 2,765,232 + HP15_2613 0.20 -0.3 2,765,345 + HP15_2613 0.39 +0.2 2,765,347 + HP15_2613 0.39 +0.1 2,765,374 + HP15_2613 0.44 -0.7 2,765,382 - HP15_2613 0.45 +0.1 2,765,478 + HP15_2613 0.61 -0.2 2,765,546 - HP15_2613 0.72 +0.3 2,765,571 + HP15_2613 0.76 +0.5 2,765,598 - HP15_2613 0.81 +1.4 2,765,598 - HP15_2613 0.81 +1.6 2,765,598 - HP15_2613 0.81 -0.2 2,765,677 + -1.5 2,765,723 + -0.3 2,765,731 - -0.0 2,765,768 - -0.1 2,766,150 + HP15_2614 0.20 -1.9 2,766,238 + HP15_2614 0.27 -1.0 2,766,238 + HP15_2614 0.27 -0.7 2,766,246 - HP15_2614 0.28 -0.5 2,766,567 + HP15_2614 0.52 -3.3 2,766,575 - HP15_2614 0.52 +0.6 2,767,094 + -1.0 2,767,175 + -2.3 2,767,227 - +0.2 2,767,292 - HP15_2615 0.13 +0.8 2,767,299 + HP15_2615 0.14 +0.8 2,767,299 + HP15_2615 0.14 -0.2 2,767,307 - HP15_2615 0.15 +0.5 2,767,320 - HP15_2615 0.17 +0.3 2,767,472 + HP15_2615 0.39 +0.0 2,767,722 + HP15_2615 0.76 +0.0 2,767,758 - HP15_2615 0.81 -0.1 2,767,767 + HP15_2615 0.82 -0.1 2,767,832 - +1.2 2,767,832 - +0.4 2,767,990 - +0.1 2,767,990 - +0.8
Or see this region's nucleotide sequence