Strain Fitness in Marinobacter adhaerens HP15 around HP15_2482

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2480 and HP15_2481 are separated by 22 nucleotidesHP15_2481 and HP15_2482 are separated by 51 nucleotidesHP15_2482 and HP15_2483 are separated by 22 nucleotidesHP15_2483 and HP15_2484 overlap by 4 nucleotides HP15_2480: HP15_2480 - conserved hypothetical protein, at 2,622,068 to 2,622,736 _2480 HP15_2481: HP15_2481 - protein of unknown function domain protein, at 2,622,759 to 2,623,004 _2481 HP15_2482: HP15_2482 - dethiobiotin synthetase, at 2,623,056 to 2,623,748 _2482 HP15_2483: HP15_2483 - protein containing methyltransferase type 11 domain, at 2,623,771 to 2,624,592 _2483 HP15_2484: HP15_2484 - biotin biosynthesis protein BioH, at 2,624,589 to 2,625,314 _2484 Position (kb) 2623 2624Strain fitness (log2 ratio) -1 0 1at 2622.079 kb on - strandat 2622.079 kb on - strandat 2622.126 kb on - strandat 2622.134 kb on + strandat 2622.196 kb on + strand, within HP15_2480at 2622.196 kb on + strand, within HP15_2480at 2622.204 kb on - strand, within HP15_2480at 2622.334 kb on - strand, within HP15_2480at 2622.343 kb on + strand, within HP15_2480at 2622.466 kb on - strand, within HP15_2480at 2622.506 kb on + strand, within HP15_2480at 2622.521 kb on + strand, within HP15_2480at 2622.706 kb on + strandat 2623.052 kb on - strandat 2623.141 kb on - strand, within HP15_2482at 2623.191 kb on + strand, within HP15_2482at 2623.272 kb on - strand, within HP15_2482at 2623.272 kb on - strand, within HP15_2482at 2623.393 kb on + strand, within HP15_2482at 2623.459 kb on + strand, within HP15_2482at 2623.467 kb on - strand, within HP15_2482at 2623.475 kb on - strand, within HP15_2482at 2623.563 kb on - strand, within HP15_2482at 2623.571 kb on + strand, within HP15_2482at 2623.579 kb on - strand, within HP15_2482at 2623.579 kb on - strand, within HP15_2482at 2623.662 kb on - strand, within HP15_2482at 2623.776 kb on - strandat 2623.784 kb on - strandat 2623.807 kb on - strandat 2623.807 kb on - strandat 2623.896 kb on - strand, within HP15_2483at 2623.911 kb on - strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.185 kb on - strand, within HP15_2483at 2624.276 kb on - strand, within HP15_2483at 2624.405 kb on - strand, within HP15_2483at 2624.425 kb on + strand, within HP15_2483at 2624.484 kb on + strand, within HP15_2483at 2624.530 kb on + strandat 2624.532 kb on - strandat 2624.587 kb on + strandat 2624.666 kb on + strand, within HP15_2484

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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2,622,079 - +0.4
2,622,079 - -0.3
2,622,126 - -0.8
2,622,134 + +0.4
2,622,196 + HP15_2480 0.19 -0.2
2,622,196 + HP15_2480 0.19 +0.7
2,622,204 - HP15_2480 0.20 +1.0
2,622,334 - HP15_2480 0.40 +1.6
2,622,343 + HP15_2480 0.41 -0.2
2,622,466 - HP15_2480 0.59 -0.1
2,622,506 + HP15_2480 0.65 +0.5
2,622,521 + HP15_2480 0.68 -0.1
2,622,706 + +0.9
2,623,052 - +0.0
2,623,141 - HP15_2482 0.12 -0.4
2,623,191 + HP15_2482 0.19 +0.2
2,623,272 - HP15_2482 0.31 -0.8
2,623,272 - HP15_2482 0.31 -0.6
2,623,393 + HP15_2482 0.49 -0.2
2,623,459 + HP15_2482 0.58 -0.1
2,623,467 - HP15_2482 0.59 +0.5
2,623,475 - HP15_2482 0.60 -1.1
2,623,563 - HP15_2482 0.73 -0.6
2,623,571 + HP15_2482 0.74 -0.1
2,623,579 - HP15_2482 0.75 -0.4
2,623,579 - HP15_2482 0.75 -0.9
2,623,662 - HP15_2482 0.87 +0.6
2,623,776 - +0.1
2,623,784 - -0.4
2,623,807 - -0.7
2,623,807 - +0.5
2,623,896 - HP15_2483 0.15 +0.3
2,623,911 - HP15_2483 0.17 +1.0
2,624,110 + HP15_2483 0.41 +0.5
2,624,110 + HP15_2483 0.41 +0.1
2,624,110 + HP15_2483 0.41 -0.8
2,624,185 - HP15_2483 0.50 -0.3
2,624,276 - HP15_2483 0.61 +0.7
2,624,405 - HP15_2483 0.77 +0.9
2,624,425 + HP15_2483 0.80 -0.2
2,624,484 + HP15_2483 0.87 -0.4
2,624,530 + -0.1
2,624,532 - +0.4
2,624,587 + -0.0
2,624,666 + HP15_2484 0.11 -0.4

Or see this region's nucleotide sequence