Strain Fitness in Marinobacter adhaerens HP15 around HP15_2111

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2110 and HP15_2111 are separated by 130 nucleotidesHP15_2111 and HP15_2112 are separated by 47 nucleotidesHP15_2112 and HP15_2113 overlap by 4 nucleotides HP15_2110: HP15_2110 - cytochrome c oxidase, cbb3-type, subunit III, at 2,208,954 to 2,209,844 _2110 HP15_2111: HP15_2111 - iron-sulfur cluster-binding protein, at 2,209,975 to 2,211,405 _2111 HP15_2112: HP15_2112 - FixH-like protein, at 2,211,453 to 2,211,968 _2112 HP15_2113: HP15_2113 - heavy-metal transporting P-type ATPase, at 2,211,965 to 2,214,412 _2113 Position (kb) 2209 2210 2211 2212Strain fitness (log2 ratio) -2 -1 0 1at 2210.330 kb on + strand, within HP15_2111at 2210.381 kb on - strand, within HP15_2111at 2210.743 kb on + strand, within HP15_2111

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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2,210,330 + HP15_2111 0.25 -1.7
2,210,381 - HP15_2111 0.28 -0.6
2,210,743 + HP15_2111 0.54 -1.8

Or see this region's nucleotide sequence