Strain Fitness in Marinobacter adhaerens HP15 around HP15_1781

Experiment: monoculture; Experiment B, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1779 and HP15_1780 are separated by 4 nucleotidesHP15_1780 and HP15_1781 are separated by 97 nucleotidesHP15_1781 and HP15_1782 are separated by 37 nucleotides HP15_1779: HP15_1779 - protein of unknown function, YeeE/YedE, at 1,875,120 to 1,875,557 _1779 HP15_1780: HP15_1780 - protein of unknown function, YeeE/YedE, at 1,875,562 to 1,875,987 _1780 HP15_1781: HP15_1781 - beta-lactamase hydrolase-like protein, at 1,876,085 to 1,876,516 _1781 HP15_1782: HP15_1782 - ferrochelatase, at 1,876,554 to 1,877,663 _1782 Position (kb) 1876 1877Strain fitness (log2 ratio) -3 -2 -1 0 1at 1875.159 kb on + strandat 1875.352 kb on - strand, within HP15_1779at 1875.391 kb on - strand, within HP15_1779at 1875.441 kb on + strand, within HP15_1779at 1875.500 kb on - strand, within HP15_1779at 1875.611 kb on + strand, within HP15_1780at 1875.731 kb on + strand, within HP15_1780at 1875.852 kb on - strand, within HP15_1780at 1875.872 kb on + strand, within HP15_1780at 1875.872 kb on + strand, within HP15_1780at 1876.026 kb on + strandat 1876.196 kb on + strand, within HP15_1781at 1876.398 kb on - strand, within HP15_1781at 1876.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1
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1,875,159 + +1.6
1,875,352 - HP15_1779 0.53 +1.0
1,875,391 - HP15_1779 0.62 -0.0
1,875,441 + HP15_1779 0.73 -0.0
1,875,500 - HP15_1779 0.87 +0.0
1,875,611 + HP15_1780 0.12 -3.3
1,875,731 + HP15_1780 0.40 +0.3
1,875,852 - HP15_1780 0.68 +0.2
1,875,872 + HP15_1780 0.73 -0.0
1,875,872 + HP15_1780 0.73 -1.2
1,876,026 + +1.1
1,876,196 + HP15_1781 0.26 -3.1
1,876,398 - HP15_1781 0.72 -1.1
1,876,559 + +0.0

Or see this region's nucleotide sequence