Strain Fitness in Marinobacter adhaerens HP15 around HP15_1624
Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment B, time point 1 |
---|---|---|---|---|---|
remove | |||||
1,722,152 | + | HP15_1623 | 0.61 | -0.2 | |
1,722,229 | + | HP15_1623 | 0.64 | +0.4 | |
1,722,331 | - | HP15_1623 | 0.68 | +0.1 | |
1,722,399 | + | HP15_1623 | 0.71 | +0.6 | |
1,722,400 | - | HP15_1623 | 0.71 | +0.4 | |
1,722,407 | - | HP15_1623 | 0.71 | +0.1 | |
1,722,565 | - | HP15_1623 | 0.77 | -0.1 | |
1,722,589 | + | HP15_1623 | 0.78 | +0.8 | |
1,722,589 | + | HP15_1623 | 0.78 | +0.6 | |
1,722,597 | - | HP15_1623 | 0.79 | -0.8 | |
1,722,606 | + | HP15_1623 | 0.79 | +1.1 | |
1,722,758 | - | HP15_1623 | 0.85 | -0.9 | |
1,722,834 | + | HP15_1623 | 0.88 | -1.2 | |
1,722,890 | + | -1.4 | |||
1,722,963 | + | +0.5 | |||
1,722,963 | + | +0.5 | |||
1,723,021 | - | +0.0 | |||
1,723,076 | - | -0.2 | |||
1,723,138 | + | +0.9 | |||
1,723,202 | + | HP15_1624 | 0.23 | -0.6 | |
1,723,309 | + | HP15_1624 | 0.70 | -1.5 | |
1,723,376 | + | +0.8 | |||
1,723,434 | + | -0.2 | |||
1,723,584 | + | +0.1 | |||
1,723,592 | - | +0.3 | |||
1,723,664 | + | -0.2 | |||
1,723,676 | - | HP15_1625 | 0.11 | +0.4 | |
1,723,923 | - | HP15_1625 | 0.36 | +0.9 |
Or see this region's nucleotide sequence