Experiment: monoculture; Experiment B, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1264 and HP15_1265 are separated by 47 nucleotides HP15_1265 and HP15_1266 are separated by 57 nucleotides HP15_1266 and HP15_1267 are separated by 43 nucleotides HP15_1267 and HP15_1268 are separated by 68 nucleotides
HP15_1264: HP15_1264 - type IV-A pilus assembly ATPase PilB, at 1,323,402 to 1,325,192
_1264
HP15_1265: HP15_1265 - conserved hypothetical protein, membrane, at 1,325,240 to 1,325,611
_1265
HP15_1266: HP15_1266 - flavodoxin/nitric oxide synthase, at 1,325,669 to 1,326,274
_1266
HP15_1267: HP15_1267 - arsenate reductase, at 1,326,318 to 1,326,671
_1267
HP15_1268: HP15_1268 - thioredoxin, at 1,326,740 to 1,327,207
_1268
Position (kb) 1325
1326
1327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1324.694 kb on + strand, within HP15_1264 at 1324.694 kb on + strand, within HP15_1264 at 1324.702 kb on - strand, within HP15_1264 at 1324.707 kb on - strand, within HP15_1264 at 1324.763 kb on + strand, within HP15_1264 at 1324.817 kb on + strand, within HP15_1264 at 1324.838 kb on - strand, within HP15_1264 at 1324.922 kb on + strand, within HP15_1264 at 1324.929 kb on + strand, within HP15_1264 at 1324.992 kb on + strand, within HP15_1264 at 1325.065 kb on + strand at 1325.154 kb on + strand at 1325.184 kb on + strand at 1325.192 kb on - strand at 1325.192 kb on - strand at 1325.243 kb on + strand at 1325.312 kb on + strand, within HP15_1265 at 1325.320 kb on - strand, within HP15_1265 at 1325.335 kb on + strand, within HP15_1265 at 1325.453 kb on + strand, within HP15_1265 at 1325.491 kb on - strand, within HP15_1265 at 1325.502 kb on + strand, within HP15_1265 at 1325.537 kb on - strand, within HP15_1265 at 1325.611 kb on - strand at 1325.633 kb on + strand at 1325.641 kb on - strand at 1325.696 kb on + strand at 1325.725 kb on + strand at 1325.776 kb on + strand, within HP15_1266 at 1325.783 kb on + strand, within HP15_1266 at 1325.783 kb on + strand, within HP15_1266 at 1325.824 kb on + strand, within HP15_1266 at 1325.836 kb on + strand, within HP15_1266 at 1325.859 kb on - strand, within HP15_1266 at 1325.975 kb on - strand, within HP15_1266 at 1326.219 kb on - strand at 1326.231 kb on - strand at 1326.323 kb on - strand at 1326.443 kb on + strand, within HP15_1267 at 1326.448 kb on + strand, within HP15_1267 at 1326.451 kb on - strand, within HP15_1267 at 1326.451 kb on - strand, within HP15_1267 at 1326.453 kb on + strand, within HP15_1267 at 1326.462 kb on - strand, within HP15_1267 at 1326.532 kb on + strand, within HP15_1267 at 1326.742 kb on + strand at 1326.758 kb on + strand at 1326.776 kb on - strand at 1326.972 kb on + strand, within HP15_1268 at 1327.049 kb on + strand, within HP15_1268 at 1327.071 kb on + strand, within HP15_1268
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 1 remove 1,324,694 + HP15_1264 0.72 +0.6 1,324,694 + HP15_1264 0.72 +0.7 1,324,702 - HP15_1264 0.73 +0.7 1,324,707 - HP15_1264 0.73 +0.9 1,324,763 + HP15_1264 0.76 -1.4 1,324,817 + HP15_1264 0.79 -0.9 1,324,838 - HP15_1264 0.80 +1.4 1,324,922 + HP15_1264 0.85 +0.9 1,324,929 + HP15_1264 0.85 +1.2 1,324,992 + HP15_1264 0.89 +0.9 1,325,065 + +0.2 1,325,154 + +2.0 1,325,184 + +0.8 1,325,192 - +0.3 1,325,192 - +0.2 1,325,243 + -0.0 1,325,312 + HP15_1265 0.19 -0.0 1,325,320 - HP15_1265 0.22 +1.0 1,325,335 + HP15_1265 0.26 +0.4 1,325,453 + HP15_1265 0.57 +0.4 1,325,491 - HP15_1265 0.67 +0.1 1,325,502 + HP15_1265 0.70 +0.6 1,325,537 - HP15_1265 0.80 +0.1 1,325,611 - +0.2 1,325,633 + -0.3 1,325,641 - -0.7 1,325,696 + +1.1 1,325,725 + +0.6 1,325,776 + HP15_1266 0.18 -0.8 1,325,783 + HP15_1266 0.19 +0.1 1,325,783 + HP15_1266 0.19 +0.0 1,325,824 + HP15_1266 0.26 +1.0 1,325,836 + HP15_1266 0.28 +0.3 1,325,859 - HP15_1266 0.31 +0.2 1,325,975 - HP15_1266 0.50 +0.7 1,326,219 - -0.2 1,326,231 - +0.7 1,326,323 - +0.6 1,326,443 + HP15_1267 0.35 +0.6 1,326,448 + HP15_1267 0.37 -1.6 1,326,451 - HP15_1267 0.38 +0.4 1,326,451 - HP15_1267 0.38 +0.2 1,326,453 + HP15_1267 0.38 +1.3 1,326,462 - HP15_1267 0.41 -0.3 1,326,532 + HP15_1267 0.60 +0.1 1,326,742 + -0.2 1,326,758 + +0.1 1,326,776 - -1.9 1,326,972 + HP15_1268 0.50 +0.3 1,327,049 + HP15_1268 0.66 -0.4 1,327,071 + HP15_1268 0.71 +0.1
Or see this region's nucleotide sequence