Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_947 and HP15_948 are separated by 46 nucleotides HP15_948 and HP15_949 are separated by 120 nucleotides HP15_949 and HP15_950 overlap by 4 nucleotides
HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903
_947
HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378
_948
HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227
_949
HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832
_950
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 964.075 kb on + strand, within HP15_947 at 964.083 kb on - strand, within HP15_947 at 964.088 kb on - strand, within HP15_947 at 964.239 kb on - strand, within HP15_947 at 964.242 kb on + strand, within HP15_947 at 964.407 kb on - strand, within HP15_947 at 964.454 kb on + strand, within HP15_947 at 964.474 kb on + strand, within HP15_947 at 964.486 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.543 kb on - strand, within HP15_947 at 964.545 kb on - strand, within HP15_947 at 964.604 kb on - strand, within HP15_947 at 964.829 kb on - strand at 964.906 kb on - strand at 964.925 kb on - strand at 965.099 kb on - strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.138 kb on - strand, within HP15_948 at 965.282 kb on + strand, within HP15_948 at 965.282 kb on - strand, within HP15_948 at 965.314 kb on - strand, within HP15_948 at 965.409 kb on - strand at 965.518 kb on + strand at 965.526 kb on - strand at 965.545 kb on + strand at 965.553 kb on - strand at 965.589 kb on + strand, within HP15_949 at 965.605 kb on + strand, within HP15_949 at 965.613 kb on - strand, within HP15_949 at 965.615 kb on + strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.857 kb on + strand, within HP15_949 at 965.865 kb on - strand, within HP15_949 at 965.966 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.009 kb on + strand, within HP15_949 at 966.017 kb on - strand, within HP15_949 at 966.051 kb on - strand, within HP15_949 at 966.056 kb on - strand, within HP15_949 at 966.239 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.250 kb on + strand at 966.258 kb on - strand at 966.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 964,075 + HP15_947 0.37 +0.9 964,083 - HP15_947 0.38 +1.1 964,088 - HP15_947 0.38 -0.3 964,239 - HP15_947 0.50 +1.3 964,242 + HP15_947 0.50 -0.2 964,407 - HP15_947 0.63 +0.2 964,454 + HP15_947 0.66 +0.3 964,474 + HP15_947 0.68 -1.8 964,486 + HP15_947 0.68 +0.2 964,537 + HP15_947 0.72 +1.1 964,537 + HP15_947 0.72 +0.3 964,543 - HP15_947 0.73 +0.9 964,545 - HP15_947 0.73 +1.3 964,604 - HP15_947 0.77 -0.7 964,829 - +2.6 964,906 - -2.0 964,925 - -0.1 965,099 - HP15_948 0.35 +1.0 965,130 + HP15_948 0.42 -1.3 965,130 + HP15_948 0.42 -0.6 965,130 + HP15_948 0.42 -0.5 965,138 - HP15_948 0.44 -0.5 965,282 + HP15_948 0.77 +1.3 965,282 - HP15_948 0.77 +0.2 965,314 - HP15_948 0.85 +0.9 965,409 - +1.0 965,518 + -0.8 965,526 - +1.9 965,545 + +0.6 965,553 - +0.6 965,589 + HP15_949 0.12 -0.1 965,605 + HP15_949 0.15 +1.1 965,613 - HP15_949 0.16 -1.6 965,615 + HP15_949 0.16 -1.8 965,623 - HP15_949 0.17 +1.9 965,623 - HP15_949 0.17 -0.9 965,857 + HP15_949 0.49 -0.7 965,865 - HP15_949 0.50 +1.3 965,966 + HP15_949 0.64 -0.8 966,009 + HP15_949 0.70 +0.4 966,009 + HP15_949 0.70 +0.8 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 -0.0 966,009 + HP15_949 0.70 -1.0 966,009 + HP15_949 0.70 +0.4 966,009 + HP15_949 0.70 -0.3 966,009 + HP15_949 0.70 -1.5 966,009 + HP15_949 0.70 +0.7 966,009 + HP15_949 0.70 -0.7 966,017 - HP15_949 0.71 +0.9 966,051 - HP15_949 0.76 -0.3 966,056 - HP15_949 0.76 -0.5 966,239 + -0.3 966,250 + -1.3 966,250 + -1.1 966,250 + -0.2 966,250 + -0.4 966,250 + +1.3 966,258 - +1.1 966,258 - +0.3
Or see this region's nucleotide sequence