Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_945 and HP15_946 are separated by 89 nucleotides HP15_946 and HP15_947 overlap by 4 nucleotides HP15_947 and HP15_948 are separated by 46 nucleotides HP15_948 and HP15_949 are separated by 120 nucleotides
HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255
_945
HP15_946: HP15_946 - conserved hypothetical protein, at 963,345 to 963,581
_946
HP15_947: HP15_947 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 963,578 to 964,903
_947
HP15_948: HP15_948 - conserved hypothetical protein, secreted, at 964,950 to 965,378
_948
HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227
_949
Position (kb) 963
964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 962.584 kb on + strand, within HP15_945 at 962.592 kb on - strand, within HP15_945 at 962.610 kb on - strand, within HP15_945 at 962.612 kb on + strand, within HP15_945 at 962.620 kb on + strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.620 kb on - strand, within HP15_945 at 962.683 kb on + strand, within HP15_945 at 962.691 kb on - strand, within HP15_945 at 962.699 kb on - strand, within HP15_945 at 962.754 kb on - strand, within HP15_945 at 962.885 kb on + strand, within HP15_945 at 962.930 kb on + strand, within HP15_945 at 962.975 kb on - strand, within HP15_945 at 962.985 kb on - strand, within HP15_945 at 962.996 kb on + strand, within HP15_945 at 962.997 kb on - strand, within HP15_945 at 963.012 kb on - strand, within HP15_945 at 963.185 kb on + strand at 963.313 kb on - strand at 963.360 kb on - strand at 963.411 kb on - strand, within HP15_946 at 963.411 kb on - strand, within HP15_946 at 963.474 kb on - strand, within HP15_946 at 963.603 kb on + strand at 963.651 kb on + strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.659 kb on - strand at 963.795 kb on - strand, within HP15_947 at 963.795 kb on - strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.837 kb on + strand, within HP15_947 at 963.845 kb on - strand, within HP15_947 at 963.859 kb on - strand, within HP15_947 at 963.943 kb on + strand, within HP15_947 at 964.075 kb on + strand, within HP15_947 at 964.083 kb on - strand, within HP15_947 at 964.088 kb on - strand, within HP15_947 at 964.239 kb on - strand, within HP15_947 at 964.242 kb on + strand, within HP15_947 at 964.407 kb on - strand, within HP15_947 at 964.454 kb on + strand, within HP15_947 at 964.474 kb on + strand, within HP15_947 at 964.486 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.537 kb on + strand, within HP15_947 at 964.543 kb on - strand, within HP15_947 at 964.545 kb on - strand, within HP15_947 at 964.604 kb on - strand, within HP15_947 at 964.829 kb on - strand at 964.906 kb on - strand at 964.925 kb on - strand at 965.099 kb on - strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.130 kb on + strand, within HP15_948 at 965.138 kb on - strand, within HP15_948 at 965.282 kb on + strand, within HP15_948 at 965.282 kb on - strand, within HP15_948 at 965.314 kb on - strand, within HP15_948 at 965.409 kb on - strand at 965.518 kb on + strand at 965.526 kb on - strand at 965.545 kb on + strand at 965.553 kb on - strand at 965.589 kb on + strand, within HP15_949 at 965.605 kb on + strand, within HP15_949 at 965.613 kb on - strand, within HP15_949 at 965.615 kb on + strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.623 kb on - strand, within HP15_949 at 965.857 kb on + strand, within HP15_949 at 965.865 kb on - strand, within HP15_949
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 962,584 + HP15_945 0.54 -0.6 962,592 - HP15_945 0.54 -2.8 962,610 - HP15_945 0.56 -0.2 962,612 + HP15_945 0.56 +1.6 962,620 + HP15_945 0.56 -0.1 962,620 - HP15_945 0.56 -0.3 962,620 - HP15_945 0.56 +0.5 962,620 - HP15_945 0.56 +0.1 962,683 + HP15_945 0.61 -0.1 962,691 - HP15_945 0.61 +0.2 962,699 - HP15_945 0.62 +0.4 962,754 - HP15_945 0.66 +0.0 962,885 + HP15_945 0.75 +0.9 962,930 + HP15_945 0.78 +1.5 962,975 - HP15_945 0.81 +1.8 962,985 - HP15_945 0.81 -0.0 962,996 + HP15_945 0.82 -0.5 962,997 - HP15_945 0.82 +0.4 963,012 - HP15_945 0.83 +0.9 963,185 + -1.3 963,313 - +0.2 963,360 - +1.6 963,411 - HP15_946 0.28 -1.4 963,411 - HP15_946 0.28 -0.6 963,474 - HP15_946 0.54 -0.3 963,603 + -0.2 963,651 + +1.0 963,659 - +0.0 963,659 - +0.1 963,659 - -0.7 963,795 - HP15_947 0.16 +1.4 963,795 - HP15_947 0.16 +1.9 963,837 + HP15_947 0.20 -0.8 963,837 + HP15_947 0.20 -1.3 963,845 - HP15_947 0.20 -0.2 963,859 - HP15_947 0.21 -1.1 963,943 + HP15_947 0.28 +0.1 964,075 + HP15_947 0.37 +0.9 964,083 - HP15_947 0.38 +1.1 964,088 - HP15_947 0.38 -0.3 964,239 - HP15_947 0.50 +1.3 964,242 + HP15_947 0.50 -0.2 964,407 - HP15_947 0.63 +0.2 964,454 + HP15_947 0.66 +0.3 964,474 + HP15_947 0.68 -1.8 964,486 + HP15_947 0.68 +0.2 964,537 + HP15_947 0.72 +1.1 964,537 + HP15_947 0.72 +0.3 964,543 - HP15_947 0.73 +0.9 964,545 - HP15_947 0.73 +1.3 964,604 - HP15_947 0.77 -0.7 964,829 - +2.6 964,906 - -2.0 964,925 - -0.1 965,099 - HP15_948 0.35 +1.0 965,130 + HP15_948 0.42 -1.3 965,130 + HP15_948 0.42 -0.6 965,130 + HP15_948 0.42 -0.5 965,138 - HP15_948 0.44 -0.5 965,282 + HP15_948 0.77 +1.3 965,282 - HP15_948 0.77 +0.2 965,314 - HP15_948 0.85 +0.9 965,409 - +1.0 965,518 + -0.8 965,526 - +1.9 965,545 + +0.6 965,553 - +0.6 965,589 + HP15_949 0.12 -0.1 965,605 + HP15_949 0.15 +1.1 965,613 - HP15_949 0.16 -1.6 965,615 + HP15_949 0.16 -1.8 965,623 - HP15_949 0.17 +1.9 965,623 - HP15_949 0.17 -0.9 965,857 + HP15_949 0.49 -0.7 965,865 - HP15_949 0.50 +1.3
Or see this region's nucleotide sequence