Strain Fitness in Marinobacter adhaerens HP15 around HP15_96

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_95 and HP15_96 are separated by 217 nucleotidesHP15_96 and HP15_97 are separated by 4 nucleotides HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925 _95 HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658 _96 HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559 _97 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 98.145 kb on + strandat 98.245 kb on + strand, within HP15_95at 98.304 kb on - strand, within HP15_95at 98.342 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.411 kb on + strand, within HP15_95at 98.414 kb on - strand, within HP15_95at 98.427 kb on + strand, within HP15_95at 98.429 kb on - strand, within HP15_95at 98.477 kb on - strand, within HP15_95at 98.550 kb on - strand, within HP15_95at 98.576 kb on + strand, within HP15_95at 98.621 kb on + strand, within HP15_95at 98.635 kb on - strand, within HP15_95at 98.666 kb on - strand, within HP15_95at 98.812 kb on + strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.820 kb on - strand, within HP15_95at 98.826 kb on - strand, within HP15_95at 98.852 kb on - strandat 98.904 kb on - strandat 98.962 kb on + strandat 98.970 kb on - strandat 98.970 kb on - strandat 98.999 kb on + strandat 98.999 kb on + strandat 99.007 kb on - strandat 99.007 kb on - strandat 99.098 kb on + strandat 99.113 kb on + strandat 99.178 kb on - strandat 99.180 kb on - strandat 99.248 kb on + strand, within HP15_96at 99.254 kb on - strand, within HP15_96at 99.255 kb on - strand, within HP15_96at 99.365 kb on - strand, within HP15_96at 99.368 kb on + strand, within HP15_96at 99.399 kb on + strand, within HP15_96at 99.404 kb on + strand, within HP15_96at 99.422 kb on - strand, within HP15_96at 99.422 kb on - strand, within HP15_96at 99.521 kb on + strand, within HP15_96at 99.552 kb on + strand, within HP15_96at 99.560 kb on - strand, within HP15_96at 99.687 kb on - strandat 99.699 kb on + strandat 99.701 kb on + strandat 99.701 kb on + strandat 99.709 kb on - strandat 99.752 kb on - strandat 99.793 kb on - strand, within HP15_97at 99.793 kb on - strand, within HP15_97at 99.836 kb on + strand, within HP15_97at 99.885 kb on - strand, within HP15_97at 99.972 kb on + strand, within HP15_97at 100.029 kb on - strand, within HP15_97at 100.034 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.069 kb on - strand, within HP15_97at 100.084 kb on - strand, within HP15_97at 100.139 kb on - strand, within HP15_97at 100.219 kb on + strand, within HP15_97at 100.270 kb on - strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.289 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.297 kb on + strand, within HP15_97at 100.331 kb on - strand, within HP15_97at 100.464 kb on + strand, within HP15_97at 100.513 kb on + strandat 100.530 kb on + strandat 100.536 kb on - strandat 100.538 kb on - strandat 100.637 kb on - strandat 100.653 kb on + strandat 100.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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98,145 + +1.0
98,245 + HP15_95 0.14 -0.5
98,304 - HP15_95 0.21 -1.3
98,342 + HP15_95 0.26 -0.3
98,411 + HP15_95 0.35 -0.3
98,411 + HP15_95 0.35 -0.8
98,414 - HP15_95 0.35 -0.8
98,427 + HP15_95 0.37 +1.5
98,429 - HP15_95 0.37 -0.1
98,477 - HP15_95 0.43 +1.0
98,550 - HP15_95 0.52 +0.8
98,576 + HP15_95 0.56 -0.7
98,621 + HP15_95 0.61 -2.4
98,635 - HP15_95 0.63 +0.7
98,666 - HP15_95 0.67 +0.5
98,812 + HP15_95 0.86 +1.5
98,820 - HP15_95 0.87 +0.9
98,820 - HP15_95 0.87 -0.7
98,826 - HP15_95 0.87 +0.2
98,852 - +0.3
98,904 - +0.5
98,962 + -0.7
98,970 - +1.0
98,970 - +0.5
98,999 + +0.3
98,999 + -0.4
99,007 - +0.6
99,007 - +3.6
99,098 + -0.7
99,113 + -2.2
99,178 - -3.0
99,180 - -0.6
99,248 + HP15_96 0.20 +0.5
99,254 - HP15_96 0.22 +0.1
99,255 - HP15_96 0.22 -0.1
99,365 - HP15_96 0.43 +0.3
99,368 + HP15_96 0.44 +1.2
99,399 + HP15_96 0.50 +1.5
99,404 + HP15_96 0.51 -0.5
99,422 - HP15_96 0.54 +0.4
99,422 - HP15_96 0.54 +1.7
99,521 + HP15_96 0.73 +1.0
99,552 + HP15_96 0.79 +0.3
99,560 - HP15_96 0.81 -0.2
99,687 - -1.4
99,699 + -0.1
99,701 + +1.9
99,701 + -0.9
99,709 - +0.7
99,752 - +0.7
99,793 - HP15_97 0.14 +1.5
99,793 - HP15_97 0.14 +1.5
99,836 + HP15_97 0.19 -0.7
99,885 - HP15_97 0.25 +0.5
99,972 + HP15_97 0.34 -0.1
100,029 - HP15_97 0.41 +1.0
100,034 - HP15_97 0.41 +0.9
100,069 - HP15_97 0.45 +0.2
100,069 - HP15_97 0.45 -0.7
100,084 - HP15_97 0.47 +1.5
100,139 - HP15_97 0.53 +0.0
100,219 + HP15_97 0.62 +0.5
100,270 - HP15_97 0.68 -0.1
100,289 + HP15_97 0.70 +1.1
100,289 + HP15_97 0.70 +0.7
100,289 + HP15_97 0.70 +0.3
100,289 + HP15_97 0.70 +0.7
100,289 + HP15_97 0.70 +2.2
100,289 + HP15_97 0.70 -1.3
100,289 + HP15_97 0.70 +0.6
100,297 + HP15_97 0.71 -1.2
100,297 + HP15_97 0.71 -0.1
100,331 - HP15_97 0.74 +0.4
100,464 + HP15_97 0.89 -0.1
100,513 + +1.3
100,530 + -0.8
100,536 - -0.4
100,538 - +2.1
100,637 - -0.2
100,653 + +0.5
100,653 + +0.1

Or see this region's nucleotide sequence