Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_915 and HP15_916 are separated by 32 nucleotides HP15_916 and HP15_917 are separated by 38 nucleotides
HP15_915: HP15_915 - secreted protein containing sulphatase-modifying factor domain, at 928,655 to 929,614
_915
HP15_916: HP15_916 - membrane protein, at 929,647 to 930,522
_916
HP15_917: HP15_917 - hypothetical protein, at 930,561 to 930,668
_917
Position (kb) 930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 929.649 kb on - strand at 929.869 kb on - strand, within HP15_916 at 930.118 kb on - strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.183 kb on + strand, within HP15_916 at 930.276 kb on + strand, within HP15_916 at 930.351 kb on - strand, within HP15_916 at 930.450 kb on + strand at 930.471 kb on - strand at 930.574 kb on - strand, within HP15_917 at 930.599 kb on - strand, within HP15_917 at 930.614 kb on - strand, within HP15_917 at 930.727 kb on - strand at 930.807 kb on - strand at 930.808 kb on + strand at 930.808 kb on + strand at 930.869 kb on - strand at 930.907 kb on - strand at 930.909 kb on + strand at 930.938 kb on - strand at 930.963 kb on + strand at 930.989 kb on + strand at 931.094 kb on - strand at 931.123 kb on + strand at 931.169 kb on + strand at 931.210 kb on - strand at 931.329 kb on + strand at 931.338 kb on - strand at 931.565 kb on + strand at 931.571 kb on + strand at 931.649 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 929,649 - -4.3 929,869 - HP15_916 0.25 -1.0 930,118 - HP15_916 0.54 -1.2 930,163 + HP15_916 0.59 +0.5 930,163 + HP15_916 0.59 -0.9 930,183 + HP15_916 0.61 +0.0 930,276 + HP15_916 0.72 -1.2 930,351 - HP15_916 0.80 +0.6 930,450 + -1.7 930,471 - +1.1 930,574 - HP15_917 0.12 -1.5 930,599 - HP15_917 0.35 -0.7 930,614 - HP15_917 0.49 -0.4 930,727 - +0.1 930,807 - -0.3 930,808 + +0.4 930,808 + -1.6 930,869 - +0.0 930,907 - +0.6 930,909 + +0.4 930,938 - -0.8 930,963 + -2.0 930,989 + -0.5 931,094 - -1.0 931,123 + -0.1 931,169 + -1.1 931,210 - +0.5 931,329 + -1.0 931,338 - -0.1 931,565 + -0.6 931,571 + -0.6 931,649 + +0.8
Or see this region's nucleotide sequence