Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_870 and HP15_871 are separated by 20 nucleotides HP15_871 and HP15_872 are separated by 60 nucleotides HP15_872 and HP15_873 are separated by 14 nucleotides HP15_873 and HP15_874 are separated by 50 nucleotides
HP15_870: HP15_870 - conserved hypothetical protein, membrane, at 889,971 to 890,444
_870
HP15_871: HP15_871 - NLP/P60 family protein, at 890,465 to 891,079
_871
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 890.155 kb on - strand, within HP15_870 at 890.250 kb on + strand, within HP15_870 at 890.451 kb on - strand at 890.564 kb on + strand, within HP15_871 at 890.669 kb on - strand, within HP15_871 at 890.707 kb on + strand, within HP15_871 at 890.744 kb on + strand, within HP15_871 at 890.835 kb on - strand, within HP15_871 at 890.858 kb on + strand, within HP15_871 at 890.955 kb on + strand, within HP15_871 at 890.965 kb on + strand, within HP15_871 at 890.973 kb on - strand, within HP15_871 at 891.103 kb on + strand at 891.132 kb on - strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.238 kb on - strand at 891.393 kb on - strand, within HP15_872 at 891.431 kb on - strand, within HP15_872 at 891.548 kb on - strand, within HP15_872 at 891.565 kb on - strand, within HP15_872 at 891.586 kb on + strand, within HP15_872 at 891.594 kb on - strand, within HP15_872 at 891.596 kb on + strand, within HP15_872 at 891.638 kb on - strand, within HP15_872 at 891.658 kb on + strand, within HP15_872 at 891.711 kb on + strand, within HP15_872 at 891.738 kb on + strand, within HP15_872 at 891.789 kb on + strand, within HP15_872 at 891.797 kb on - strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.881 kb on - strand, within HP15_872 at 891.892 kb on + strand, within HP15_872 at 892.055 kb on - strand, within HP15_872 at 892.175 kb on - strand at 892.176 kb on + strand at 892.176 kb on + strand at 892.184 kb on - strand at 892.184 kb on - strand at 892.189 kb on - strand at 892.214 kb on + strand at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 890,155 - HP15_870 0.39 -0.7 890,250 + HP15_870 0.59 +1.2 890,451 - -2.4 890,564 + HP15_871 0.16 +2.8 890,669 - HP15_871 0.33 +1.0 890,707 + HP15_871 0.39 -0.5 890,744 + HP15_871 0.45 -0.5 890,835 - HP15_871 0.60 -0.5 890,858 + HP15_871 0.64 -0.7 890,955 + HP15_871 0.80 -0.4 890,965 + HP15_871 0.81 -1.0 890,973 - HP15_871 0.83 +0.1 891,103 + +0.5 891,132 - +1.2 891,162 + +0.4 891,162 + -1.7 891,238 - +0.8 891,393 - HP15_872 0.25 -0.4 891,431 - HP15_872 0.28 +0.5 891,548 - HP15_872 0.40 +0.8 891,565 - HP15_872 0.41 -0.9 891,586 + HP15_872 0.43 +0.6 891,594 - HP15_872 0.44 +0.4 891,596 + HP15_872 0.44 -0.1 891,638 - HP15_872 0.48 -0.5 891,658 + HP15_872 0.50 +0.8 891,711 + HP15_872 0.55 +0.0 891,738 + HP15_872 0.58 +1.1 891,789 + HP15_872 0.63 +0.0 891,797 - HP15_872 0.64 +0.9 891,879 + HP15_872 0.72 +0.1 891,879 + HP15_872 0.72 -1.9 891,881 - HP15_872 0.72 +1.1 891,892 + HP15_872 0.73 +0.8 892,055 - HP15_872 0.89 +0.2 892,175 - +0.9 892,176 + -0.7 892,176 + -0.5 892,184 - +0.9 892,184 - +0.7 892,189 - +0.2 892,214 + +1.0 892,282 + HP15_873 0.26 +0.1 892,341 - HP15_873 0.41 +0.1 892,416 + HP15_873 0.61 +0.2 892,531 - -1.1 892,531 - -0.1 892,580 - -0.0 892,580 - +1.6 892,706 + HP15_874 0.16 -0.9 892,788 + HP15_874 0.31 +0.6 892,902 + HP15_874 0.51 -0.8 892,910 - HP15_874 0.52 +0.2 893,018 - HP15_874 0.71 -0.1 893,110 + HP15_874 0.87 +0.6
Or see this region's nucleotide sequence