Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_673 and HP15_674 overlap by 11 nucleotides HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides
HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646
_673
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
Position (kb) 695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 694.387 kb on + strand, within HP15_673 at 694.405 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.461 kb on - strand at 694.480 kb on + strand at 694.546 kb on + strand at 694.546 kb on + strand at 694.549 kb on - strand at 694.554 kb on - strand at 694.554 kb on - strand at 694.556 kb on + strand at 694.641 kb on - strand at 694.666 kb on - strand at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 694,387 + HP15_673 0.87 +5.6 694,405 - HP15_673 0.88 -1.1 694,410 - HP15_673 0.88 +0.4 694,410 - HP15_673 0.88 +0.7 694,410 - HP15_673 0.88 +1.5 694,461 - -0.4 694,480 + -1.1 694,546 + +1.7 694,546 + -0.3 694,549 - +0.1 694,554 - -1.1 694,554 - -1.4 694,556 + +1.9 694,641 - +0.1 694,666 - +0.9 694,728 - HP15_674 0.18 -0.6 694,730 + HP15_674 0.18 +0.9 694,745 + HP15_674 0.21 -0.9 694,749 - HP15_674 0.22 +0.2 694,826 + HP15_674 0.37 +2.1 694,834 - HP15_674 0.38 -0.1 694,961 + HP15_674 0.63 -1.7 695,043 - HP15_674 0.78 -0.3 695,123 - +1.3 695,128 - -1.5 695,143 - -0.8 695,167 - -2.5 695,227 + -0.8 695,233 + +0.2 695,233 - -1.4 695,250 - -4.6 695,271 + +0.1 695,320 - HP15_675 0.11 -2.8 695,322 + HP15_675 0.12 -0.6 695,426 - HP15_675 0.36 -0.1 695,532 + HP15_675 0.60 -1.0 695,537 + HP15_675 0.61 -0.2 695,571 - HP15_675 0.69 -0.4 695,603 + HP15_675 0.77 -1.2 695,609 + HP15_675 0.78 +1.9 695,617 - HP15_675 0.80 -1.6 695,659 - HP15_675 0.90 +3.1 695,710 + -0.5 695,766 - HP15_676 0.12 -1.5 695,801 + HP15_676 0.20 +0.6 695,860 + HP15_676 0.34 -0.5 695,860 + HP15_676 0.34 -0.6 695,914 - HP15_676 0.47 -2.5 695,957 + HP15_676 0.57 -0.4 695,957 - HP15_676 0.57 +0.0 696,085 + HP15_676 0.87 +0.3 696,092 + HP15_676 0.88 -2.5 696,235 + HP15_677 0.29 +0.3 696,292 - HP15_677 0.48 -2.5 696,311 - HP15_677 0.54 -0.5 696,322 - HP15_677 0.58 -4.3 696,412 - HP15_677 0.87 -2.2 696,419 - HP15_677 0.89 -0.5 696,501 + +0.5 696,520 - -1.3 696,549 + -0.7 696,549 + -0.3 696,557 - +0.5 696,635 + HP15_678 0.17 -1.3 696,641 - HP15_678 0.18 -0.1 696,641 - HP15_678 0.18 -2.1 696,641 - HP15_678 0.18 -0.1
Or see this region's nucleotide sequence