Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_654 and HP15_655 are separated by 90 nucleotides HP15_655 and HP15_656 are separated by 28 nucleotides HP15_656 and HP15_657 are separated by 9 nucleotides
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463
_655
HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773
_656
HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219
_657
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 676.061 kb on - strand, within HP15_654 at 676.063 kb on + strand, within HP15_654 at 676.069 kb on - strand, within HP15_654 at 676.071 kb on - strand, within HP15_654 at 676.130 kb on + strand, within HP15_654 at 676.160 kb on + strand, within HP15_654 at 676.173 kb on - strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.221 kb on + strand, within HP15_654 at 676.224 kb on - strand, within HP15_654 at 676.308 kb on - strand, within HP15_654 at 676.379 kb on + strand, within HP15_654 at 676.452 kb on - strand, within HP15_654 at 676.455 kb on + strand, within HP15_654 at 676.520 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.539 kb on - strand, within HP15_654 at 676.544 kb on - strand, within HP15_654 at 676.564 kb on - strand, within HP15_654 at 676.654 kb on + strand, within HP15_654 at 676.662 kb on - strand, within HP15_654 at 676.881 kb on + strand at 676.881 kb on + strand at 676.889 kb on - strand at 676.889 kb on - strand at 676.935 kb on - strand at 677.150 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.326 kb on - strand, within HP15_655 at 677.405 kb on - strand, within HP15_655 at 677.434 kb on - strand at 677.439 kb on - strand at 677.498 kb on - strand at 677.545 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.733 kb on + strand, within HP15_656 at 677.736 kb on - strand, within HP15_656 at 677.793 kb on + strand at 677.793 kb on + strand at 677.865 kb on - strand at 678.000 kb on + strand, within HP15_657 at 678.040 kb on - strand, within HP15_657 at 678.052 kb on - strand, within HP15_657 at 678.092 kb on + strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.146 kb on - strand, within HP15_657 at 678.201 kb on + strand, within HP15_657 at 678.273 kb on - strand, within HP15_657 at 678.319 kb on - strand, within HP15_657 at 678.333 kb on - strand, within HP15_657 at 678.409 kb on + strand, within HP15_657 at 678.409 kb on - strand, within HP15_657
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 676,061 - HP15_654 0.44 +1.6 676,063 + HP15_654 0.44 -0.7 676,069 - HP15_654 0.45 +0.8 676,071 - HP15_654 0.45 +0.5 676,130 + HP15_654 0.49 +0.8 676,160 + HP15_654 0.51 +0.2 676,173 - HP15_654 0.52 -1.4 676,221 + HP15_654 0.55 -0.8 676,221 + HP15_654 0.55 +0.0 676,224 - HP15_654 0.55 +1.9 676,308 - HP15_654 0.60 +0.1 676,379 + HP15_654 0.65 -0.0 676,452 - HP15_654 0.70 -0.3 676,455 + HP15_654 0.70 +0.8 676,520 - HP15_654 0.74 -1.9 676,539 - HP15_654 0.76 +0.5 676,539 - HP15_654 0.76 -0.6 676,544 - HP15_654 0.76 +0.1 676,564 - HP15_654 0.77 +0.2 676,654 + HP15_654 0.83 +1.7 676,662 - HP15_654 0.84 -2.2 676,881 + -0.8 676,881 + -0.7 676,889 - -0.8 676,889 - -0.1 676,935 - -0.7 677,150 - HP15_655 0.32 -0.3 677,249 - HP15_655 0.54 -0.3 677,249 - HP15_655 0.54 -1.4 677,326 - HP15_655 0.70 -1.7 677,405 - HP15_655 0.87 -0.1 677,434 - +1.2 677,439 - -0.2 677,498 - -1.1 677,545 - HP15_656 0.19 -1.0 677,582 - HP15_656 0.32 -0.2 677,582 - HP15_656 0.32 -0.6 677,733 + HP15_656 0.85 -0.1 677,736 - HP15_656 0.87 -0.6 677,793 + -0.2 677,793 + +0.8 677,865 - -1.0 678,000 + HP15_657 0.15 -0.7 678,040 - HP15_657 0.18 +1.2 678,052 - HP15_657 0.19 -0.3 678,092 + HP15_657 0.22 -0.9 678,130 - HP15_657 0.24 +0.2 678,130 - HP15_657 0.24 +0.3 678,146 - HP15_657 0.25 +0.4 678,201 + HP15_657 0.29 -0.2 678,273 - HP15_657 0.34 -1.1 678,319 - HP15_657 0.37 -0.5 678,333 - HP15_657 0.38 +0.3 678,409 + HP15_657 0.44 +0.3 678,409 - HP15_657 0.44 -0.9
Or see this region's nucleotide sequence