Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_630 and HP15_631 are separated by 17 nucleotides HP15_631 and HP15_632 are separated by 50 nucleotides HP15_632 and HP15_633 are separated by 24 nucleotides HP15_633 and HP15_634 are separated by 27 nucleotides HP15_634 and HP15_635 are separated by 139 nucleotides
HP15_630: HP15_630 - alanine racemase, at 653,273 to 654,349
_630
HP15_631: HP15_631 - conserved hypothetical protein, at 654,367 to 654,723
_631
HP15_632: HP15_632 - hypothetical protein, at 654,774 to 654,893
_632
HP15_633: HP15_633 - dTDP-4-dehydrorhamnose reductase-like protein, at 654,918 to 655,751
_633
HP15_634: HP15_634 - transcriptional regulator, Crp/Fnr family, at 655,779 to 656,528
_634
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.375 kb on + strand at 654.607 kb on + strand, within HP15_631 at 654.663 kb on + strand, within HP15_631 at 654.706 kb on + strand at 654.929 kb on + strand at 655.046 kb on + strand, within HP15_633 at 655.344 kb on + strand, within HP15_633 at 655.344 kb on + strand, within HP15_633 at 655.610 kb on + strand, within HP15_633 at 655.959 kb on - strand, within HP15_634 at 656.069 kb on + strand, within HP15_634 at 656.240 kb on - strand, within HP15_634 at 656.271 kb on + strand, within HP15_634 at 656.399 kb on + strand, within HP15_634 at 656.658 kb on - strand at 656.658 kb on - strand at 656.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 654,375 + -0.9 654,607 + HP15_631 0.67 +0.5 654,663 + HP15_631 0.83 -0.1 654,706 + -0.1 654,929 + -2.0 655,046 + HP15_633 0.15 -1.8 655,344 + HP15_633 0.51 -2.3 655,344 + HP15_633 0.51 -2.9 655,610 + HP15_633 0.83 -0.8 655,959 - HP15_634 0.24 +0.3 656,069 + HP15_634 0.39 -0.2 656,240 - HP15_634 0.61 +2.0 656,271 + HP15_634 0.66 +0.5 656,399 + HP15_634 0.83 -0.1 656,658 - +0.5 656,658 - -0.5 656,658 - +1.1
Or see this region's nucleotide sequence