Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_553 and HP15_552 are separated by 0 nucleotides HP15_552 and HP15_554 are separated by 135 nucleotides HP15_554 and HP15_555 are separated by 705 nucleotides
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
HP15_552: HP15_552 - hypothetical protein, at 573,098 to 573,304
_552
HP15_554: HP15_554 - tetrapyrrole methylase family protein, at 573,440 to 574,336
_554
HP15_555: HP15_555 - MraZ protein, at 575,042 to 575,494
_555
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2
3 at 573.394 kb on + strand at 573.416 kb on - strand at 573.430 kb on + strand at 573.438 kb on - strand at 573.544 kb on + strand, within HP15_554 at 573.557 kb on + strand, within HP15_554 at 573.662 kb on - strand, within HP15_554 at 573.694 kb on - strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.787 kb on + strand, within HP15_554 at 573.792 kb on + strand, within HP15_554 at 573.801 kb on + strand, within HP15_554 at 573.828 kb on + strand, within HP15_554 at 573.834 kb on - strand, within HP15_554 at 573.838 kb on + strand, within HP15_554 at 573.935 kb on - strand, within HP15_554 at 574.016 kb on - strand, within HP15_554 at 574.048 kb on - strand, within HP15_554 at 574.082 kb on - strand, within HP15_554 at 574.213 kb on - strand, within HP15_554 at 574.269 kb on + strand at 574.269 kb on + strand at 574.332 kb on + strand at 574.385 kb on - strand at 575.026 kb on + strand at 575.131 kb on + strand, within HP15_555 at 575.237 kb on + strand, within HP15_555
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 573,394 + +0.7 573,416 - -0.3 573,430 + -0.8 573,438 - -0.4 573,544 + HP15_554 0.12 +0.6 573,557 + HP15_554 0.13 +1.1 573,662 - HP15_554 0.25 +1.0 573,694 - HP15_554 0.28 +1.4 573,703 + HP15_554 0.29 +0.5 573,703 + HP15_554 0.29 -0.2 573,703 + HP15_554 0.29 +1.0 573,703 + HP15_554 0.29 +1.2 573,711 - HP15_554 0.30 -0.2 573,711 - HP15_554 0.30 +2.2 573,711 - HP15_554 0.30 +1.1 573,787 + HP15_554 0.39 +1.0 573,792 + HP15_554 0.39 -0.1 573,801 + HP15_554 0.40 +1.5 573,828 + HP15_554 0.43 -0.0 573,834 - HP15_554 0.44 +0.7 573,838 + HP15_554 0.44 +1.7 573,935 - HP15_554 0.55 +2.8 574,016 - HP15_554 0.64 +0.1 574,048 - HP15_554 0.68 +0.5 574,082 - HP15_554 0.72 +0.4 574,213 - HP15_554 0.86 +1.7 574,269 + +1.2 574,269 + +3.2 574,332 + +1.6 574,385 - +0.8 575,026 + +3.2 575,131 + HP15_555 0.20 +0.5 575,237 + HP15_555 0.43 +0.4
Or see this region's nucleotide sequence