Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g160

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g159 and HP15_p187g160 are separated by 17 nucleotidesHP15_p187g160 and HP15_p187g161 are separated by 507 nucleotides HP15_p187g159: HP15_p187g159 - kelch domain protein, at 160,552 to 162,888 _p187g159 HP15_p187g160: HP15_p187g160 - conserved hypothetical protein, secreted, at 162,906 to 163,457 _p187g160 HP15_p187g161: HP15_p187g161 - conserved hypothetical protein, at 163,965 to 164,936 _p187g161 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 161.906 kb on + strand, within HP15_p187g159at 161.989 kb on + strand, within HP15_p187g159at 161.989 kb on + strand, within HP15_p187g159at 161.997 kb on - strand, within HP15_p187g159at 162.012 kb on - strand, within HP15_p187g159at 162.048 kb on + strand, within HP15_p187g159at 162.050 kb on + strand, within HP15_p187g159at 162.058 kb on - strand, within HP15_p187g159at 162.085 kb on - strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.107 kb on + strand, within HP15_p187g159at 162.115 kb on - strand, within HP15_p187g159at 162.121 kb on + strand, within HP15_p187g159at 162.285 kb on + strand, within HP15_p187g159at 162.286 kb on - strand, within HP15_p187g159at 162.293 kb on - strand, within HP15_p187g159at 162.295 kb on + strand, within HP15_p187g159at 162.297 kb on + strand, within HP15_p187g159at 162.297 kb on + strand, within HP15_p187g159at 162.354 kb on + strand, within HP15_p187g159at 162.362 kb on - strand, within HP15_p187g159at 162.406 kb on + strand, within HP15_p187g159at 162.416 kb on + strand, within HP15_p187g159at 162.428 kb on - strand, within HP15_p187g159at 162.447 kb on + strand, within HP15_p187g159at 162.447 kb on + strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.455 kb on - strand, within HP15_p187g159at 162.469 kb on + strand, within HP15_p187g159at 162.516 kb on + strand, within HP15_p187g159at 162.521 kb on + strand, within HP15_p187g159at 162.564 kb on - strand, within HP15_p187g159at 162.628 kb on + strand, within HP15_p187g159at 162.636 kb on - strand, within HP15_p187g159at 162.672 kb on + strandat 162.691 kb on + strandat 162.695 kb on + strandat 162.699 kb on - strandat 162.699 kb on - strandat 162.699 kb on - strandat 162.704 kb on - strandat 162.731 kb on + strandat 162.745 kb on + strandat 162.759 kb on - strandat 162.770 kb on + strandat 162.794 kb on - strandat 162.802 kb on - strandat 162.802 kb on - strandat 162.835 kb on - strandat 162.914 kb on + strandat 162.914 kb on + strandat 162.919 kb on + strandat 162.919 kb on + strandat 162.927 kb on - strandat 162.927 kb on - strandat 162.927 kb on - strandat 162.965 kb on - strand, within HP15_p187g160at 162.981 kb on + strand, within HP15_p187g160at 162.989 kb on - strand, within HP15_p187g160at 163.016 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.028 kb on + strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.062 kb on + strand, within HP15_p187g160at 163.100 kb on - strand, within HP15_p187g160at 163.104 kb on + strand, within HP15_p187g160at 163.112 kb on - strand, within HP15_p187g160at 163.140 kb on + strand, within HP15_p187g160at 163.148 kb on - strand, within HP15_p187g160at 163.238 kb on + strand, within HP15_p187g160at 163.248 kb on - strand, within HP15_p187g160at 163.300 kb on + strand, within HP15_p187g160at 163.335 kb on + strand, within HP15_p187g160at 163.340 kb on + strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.344 kb on + strand, within HP15_p187g160at 163.345 kb on + strand, within HP15_p187g160at 163.353 kb on - strand, within HP15_p187g160at 163.357 kb on + strand, within HP15_p187g160at 163.377 kb on + strand, within HP15_p187g160at 163.378 kb on - strand, within HP15_p187g160at 163.407 kb on + strandat 163.486 kb on + strandat 163.487 kb on - strandat 163.494 kb on - strandat 163.560 kb on + strandat 163.560 kb on + strandat 163.568 kb on - strandat 163.628 kb on + strandat 163.715 kb on - strandat 163.738 kb on + strandat 163.776 kb on + strandat 163.784 kb on - strandat 163.789 kb on - strandat 163.806 kb on - strandat 163.846 kb on - strandat 163.868 kb on - strandat 163.889 kb on + strandat 163.889 kb on + strandat 163.896 kb on + strandat 163.917 kb on - strandat 163.917 kb on - strandat 163.940 kb on + strandat 163.948 kb on - strandat 163.948 kb on - strandat 163.964 kb on + strandat 163.969 kb on + strandat 163.972 kb on - strandat 163.986 kb on - strandat 164.002 kb on + strandat 164.161 kb on + strand, within HP15_p187g161at 164.169 kb on - strand, within HP15_p187g161at 164.169 kb on - strand, within HP15_p187g161at 164.220 kb on + strand, within HP15_p187g161at 164.250 kb on - strand, within HP15_p187g161at 164.338 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.366 kb on - strand, within HP15_p187g161at 164.370 kb on - strand, within HP15_p187g161at 164.372 kb on + strand, within HP15_p187g161

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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161,906 + HP15_p187g159 0.58 -0.8
161,989 + HP15_p187g159 0.61 -0.7
161,989 + HP15_p187g159 0.61 +3.1
161,997 - HP15_p187g159 0.62 +0.3
162,012 - HP15_p187g159 0.62 +1.5
162,048 + HP15_p187g159 0.64 +2.5
162,050 + HP15_p187g159 0.64 -0.0
162,058 - HP15_p187g159 0.64 -0.5
162,085 - HP15_p187g159 0.66 -0.4
162,107 + HP15_p187g159 0.67 -0.0
162,107 + HP15_p187g159 0.67 +0.1
162,107 + HP15_p187g159 0.67 -0.7
162,115 - HP15_p187g159 0.67 -1.1
162,121 + HP15_p187g159 0.67 -0.4
162,285 + HP15_p187g159 0.74 +0.4
162,286 - HP15_p187g159 0.74 +0.3
162,293 - HP15_p187g159 0.74 -1.2
162,295 + HP15_p187g159 0.75 -0.8
162,297 + HP15_p187g159 0.75 +0.6
162,297 + HP15_p187g159 0.75 +0.4
162,354 + HP15_p187g159 0.77 +0.2
162,362 - HP15_p187g159 0.77 +0.2
162,406 + HP15_p187g159 0.79 +0.8
162,416 + HP15_p187g159 0.80 +0.1
162,428 - HP15_p187g159 0.80 +1.1
162,447 + HP15_p187g159 0.81 -1.6
162,447 + HP15_p187g159 0.81 +1.0
162,455 - HP15_p187g159 0.81 -2.1
162,455 - HP15_p187g159 0.81 +1.2
162,455 - HP15_p187g159 0.81 +0.6
162,455 - HP15_p187g159 0.81 +1.1
162,455 - HP15_p187g159 0.81 +1.4
162,469 + HP15_p187g159 0.82 +0.2
162,516 + HP15_p187g159 0.84 -0.2
162,521 + HP15_p187g159 0.84 +0.2
162,564 - HP15_p187g159 0.86 +1.7
162,628 + HP15_p187g159 0.89 +0.7
162,636 - HP15_p187g159 0.89 +0.8
162,672 + +0.9
162,691 + -0.8
162,695 + -0.0
162,699 - +0.4
162,699 - -0.3
162,699 - -0.1
162,704 - +0.1
162,731 + +1.1
162,745 + -2.8
162,759 - +0.6
162,770 + -0.9
162,794 - -1.1
162,802 - +0.2
162,802 - -0.1
162,835 - +0.1
162,914 + -0.0
162,914 + +0.2
162,919 + -0.2
162,919 + -0.7
162,927 - +0.4
162,927 - -1.2
162,927 - -1.6
162,965 - HP15_p187g160 0.11 +0.5
162,981 + HP15_p187g160 0.14 +1.1
162,989 - HP15_p187g160 0.15 +0.9
163,016 + HP15_p187g160 0.20 -3.6
163,023 + HP15_p187g160 0.21 +0.2
163,023 + HP15_p187g160 0.21 +0.5
163,023 + HP15_p187g160 0.21 +0.8
163,023 + HP15_p187g160 0.21 -1.1
163,028 + HP15_p187g160 0.22 -0.8
163,031 - HP15_p187g160 0.23 +0.8
163,031 - HP15_p187g160 0.23 -0.9
163,031 - HP15_p187g160 0.23 -1.3
163,062 + HP15_p187g160 0.28 +0.0
163,100 - HP15_p187g160 0.35 -0.5
163,104 + HP15_p187g160 0.36 +0.2
163,112 - HP15_p187g160 0.37 -0.6
163,140 + HP15_p187g160 0.42 +0.6
163,148 - HP15_p187g160 0.44 +0.1
163,238 + HP15_p187g160 0.60 +1.3
163,248 - HP15_p187g160 0.62 +0.1
163,300 + HP15_p187g160 0.71 +0.2
163,335 + HP15_p187g160 0.78 -0.9
163,340 + HP15_p187g160 0.79 -0.2
163,343 - HP15_p187g160 0.79 -1.1
163,343 - HP15_p187g160 0.79 -0.2
163,343 - HP15_p187g160 0.79 -0.3
163,344 + HP15_p187g160 0.79 -0.5
163,345 + HP15_p187g160 0.80 -1.1
163,353 - HP15_p187g160 0.81 -1.7
163,357 + HP15_p187g160 0.82 -1.1
163,377 + HP15_p187g160 0.85 -0.3
163,378 - HP15_p187g160 0.86 -0.5
163,407 + -1.6
163,486 + +1.0
163,487 - -0.2
163,494 - -0.4
163,560 + +1.1
163,560 + -0.8
163,568 - +0.1
163,628 + -0.2
163,715 - +0.7
163,738 + -2.0
163,776 + +0.8
163,784 - +0.5
163,789 - +1.1
163,806 - +0.3
163,846 - +0.9
163,868 - +0.0
163,889 + -0.7
163,889 + -0.1
163,896 + +0.7
163,917 - -0.1
163,917 - +0.2
163,940 + +3.1
163,948 - +1.0
163,948 - -0.6
163,964 + -0.5
163,969 + +0.2
163,972 - +0.9
163,986 - -0.3
164,002 + -2.3
164,161 + HP15_p187g161 0.20 +0.0
164,169 - HP15_p187g161 0.21 -1.0
164,169 - HP15_p187g161 0.21 +0.4
164,220 + HP15_p187g161 0.26 -1.8
164,250 - HP15_p187g161 0.29 -1.6
164,338 - HP15_p187g161 0.38 -0.6
164,344 - HP15_p187g161 0.39 +0.3
164,344 - HP15_p187g161 0.39 +3.1
164,344 - HP15_p187g161 0.39 +1.2
164,344 - HP15_p187g161 0.39 -0.7
164,344 - HP15_p187g161 0.39 -0.5
164,366 - HP15_p187g161 0.41 -0.2
164,370 - HP15_p187g161 0.42 -1.4
164,372 + HP15_p187g161 0.42 +0.6

Or see this region's nucleotide sequence