Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g157 and HP15_p187g158 are separated by 231 nucleotides HP15_p187g158 and HP15_p187g159 are separated by 168 nucleotides
HP15_p187g157: HP15_p187g157 - fatty acid desaturase, at 158,215 to 159,114
_p187g157
HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383
_p187g158
HP15_p187g159: HP15_p187g159 - kelch domain protein, at 160,552 to 162,888
_p187g159
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.365 kb on + strand, within HP15_p187g157 at 158.391 kb on - strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.406 kb on - strand, within HP15_p187g157 at 158.411 kb on - strand, within HP15_p187g157 at 158.420 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.452 kb on - strand, within HP15_p187g157 at 158.468 kb on + strand, within HP15_p187g157 at 158.485 kb on - strand, within HP15_p187g157 at 158.486 kb on - strand, within HP15_p187g157 at 158.507 kb on - strand, within HP15_p187g157 at 158.509 kb on + strand, within HP15_p187g157 at 158.517 kb on - strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.571 kb on - strand, within HP15_p187g157 at 158.644 kb on + strand, within HP15_p187g157 at 158.723 kb on - strand, within HP15_p187g157 at 158.835 kb on + strand, within HP15_p187g157 at 158.841 kb on - strand, within HP15_p187g157 at 158.911 kb on - strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.990 kb on - strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.029 kb on - strand at 159.029 kb on - strand at 159.030 kb on - strand at 159.049 kb on + strand at 159.049 kb on + strand at 159.057 kb on - strand at 159.091 kb on + strand at 159.120 kb on + strand at 159.125 kb on + strand at 159.126 kb on + strand at 159.153 kb on + strand at 159.161 kb on - strand at 159.161 kb on - strand at 159.162 kb on + strand at 159.163 kb on + strand at 159.170 kb on - strand at 159.179 kb on - strand at 159.181 kb on + strand at 159.189 kb on - strand at 159.201 kb on - strand at 159.210 kb on - strand at 159.224 kb on - strand at 159.226 kb on + strand at 159.266 kb on + strand at 159.268 kb on + strand at 159.274 kb on - strand at 159.274 kb on - strand at 159.276 kb on - strand at 159.284 kb on - strand at 159.286 kb on + strand at 159.435 kb on + strand at 159.438 kb on + strand at 159.438 kb on + strand at 159.441 kb on - strand at 159.441 kb on - strand at 159.443 kb on + strand at 159.451 kb on - strand, within HP15_p187g158 at 159.487 kb on - strand, within HP15_p187g158 at 159.501 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.509 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.530 kb on + strand, within HP15_p187g158 at 159.538 kb on - strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.677 kb on - strand, within HP15_p187g158 at 159.730 kb on + strand, within HP15_p187g158 at 159.730 kb on - strand, within HP15_p187g158 at 159.748 kb on - strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.814 kb on + strand, within HP15_p187g158 at 159.832 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.909 kb on - strand, within HP15_p187g158 at 159.914 kb on - strand, within HP15_p187g158 at 159.944 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.012 kb on + strand, within HP15_p187g158 at 160.066 kb on + strand, within HP15_p187g158 at 160.067 kb on - strand, within HP15_p187g158 at 160.114 kb on + strand, within HP15_p187g158 at 160.122 kb on - strand, within HP15_p187g158 at 160.128 kb on + strand, within HP15_p187g158 at 160.146 kb on - strand, within HP15_p187g158 at 160.158 kb on + strand, within HP15_p187g158 at 160.187 kb on - strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.198 kb on + strand, within HP15_p187g158 at 160.206 kb on - strand, within HP15_p187g158 at 160.208 kb on + strand, within HP15_p187g158 at 160.231 kb on + strand, within HP15_p187g158 at 160.233 kb on + strand, within HP15_p187g158 at 160.234 kb on - strand, within HP15_p187g158 at 160.236 kb on + strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.239 kb on - strand, within HP15_p187g158 at 160.300 kb on + strand at 160.306 kb on + strand at 160.308 kb on - strand at 160.308 kb on - strand at 160.320 kb on + strand at 160.328 kb on - strand at 160.355 kb on + strand at 160.363 kb on - strand at 160.380 kb on - strand at 160.400 kb on + strand at 160.589 kb on + strand at 160.594 kb on + strand at 160.594 kb on + strand at 160.602 kb on - strand at 160.602 kb on - strand at 160.665 kb on + strand at 160.712 kb on - strand at 160.783 kb on + strand at 160.851 kb on - strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.860 kb on + strand, within HP15_p187g159 at 160.896 kb on - strand, within HP15_p187g159 at 160.940 kb on + strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.958 kb on - strand, within HP15_p187g159 at 160.963 kb on - strand, within HP15_p187g159 at 160.971 kb on - strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 160.994 kb on + strand, within HP15_p187g159 at 161.002 kb on - strand, within HP15_p187g159 at 161.077 kb on + strand, within HP15_p187g159 at 161.090 kb on - strand, within HP15_p187g159 at 161.092 kb on + strand, within HP15_p187g159 at 161.092 kb on - strand, within HP15_p187g159 at 161.094 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.107 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.128 kb on + strand, within HP15_p187g159 at 161.172 kb on + strand, within HP15_p187g159 at 161.230 kb on + strand, within HP15_p187g159 at 161.377 kb on - strand, within HP15_p187g159
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 158,365 + HP15_p187g157 0.17 -0.0 158,391 - HP15_p187g157 0.20 +0.1 158,398 + HP15_p187g157 0.20 -0.0 158,398 + HP15_p187g157 0.20 +1.5 158,406 - HP15_p187g157 0.21 +0.4 158,411 - HP15_p187g157 0.22 +1.2 158,420 - HP15_p187g157 0.23 +0.0 158,435 - HP15_p187g157 0.24 -0.5 158,435 - HP15_p187g157 0.24 -0.1 158,452 - HP15_p187g157 0.26 +1.3 158,468 + HP15_p187g157 0.28 -0.5 158,485 - HP15_p187g157 0.30 +1.1 158,486 - HP15_p187g157 0.30 +0.3 158,507 - HP15_p187g157 0.32 +1.0 158,509 + HP15_p187g157 0.33 -0.7 158,517 - HP15_p187g157 0.34 -0.9 158,521 + HP15_p187g157 0.34 -0.5 158,521 + HP15_p187g157 0.34 +0.1 158,523 + HP15_p187g157 0.34 -0.3 158,523 + HP15_p187g157 0.34 -0.4 158,531 - HP15_p187g157 0.35 -0.4 158,531 - HP15_p187g157 0.35 -2.3 158,531 - HP15_p187g157 0.35 +0.4 158,571 - HP15_p187g157 0.40 +2.1 158,644 + HP15_p187g157 0.48 +0.1 158,723 - HP15_p187g157 0.56 -0.3 158,835 + HP15_p187g157 0.69 +0.5 158,841 - HP15_p187g157 0.70 +0.4 158,911 - HP15_p187g157 0.77 +1.9 158,946 + HP15_p187g157 0.81 +0.7 158,946 + HP15_p187g157 0.81 +0.5 158,946 + HP15_p187g157 0.81 -1.0 158,946 + HP15_p187g157 0.81 -2.2 158,946 + HP15_p187g157 0.81 -2.2 158,951 + HP15_p187g157 0.82 +0.1 158,951 + HP15_p187g157 0.82 -0.7 158,951 + HP15_p187g157 0.82 -0.8 158,954 - HP15_p187g157 0.82 +1.3 158,954 - HP15_p187g157 0.82 +0.5 158,959 - HP15_p187g157 0.83 -0.0 158,959 - HP15_p187g157 0.83 +1.0 158,990 - HP15_p187g157 0.86 +1.1 159,021 + HP15_p187g157 0.90 -0.5 159,021 + HP15_p187g157 0.90 +0.4 159,029 - -0.8 159,029 - -0.0 159,030 - -1.1 159,049 + -0.0 159,049 + -0.1 159,057 - -0.5 159,091 + +0.9 159,120 + -0.0 159,125 + +0.6 159,126 + +0.9 159,153 + +0.6 159,161 - +0.1 159,161 - +0.4 159,162 + -0.5 159,163 + +0.7 159,170 - -0.5 159,179 - -0.5 159,181 + -0.2 159,189 - -1.5 159,201 - -1.7 159,210 - -1.2 159,224 - -1.6 159,226 + +2.4 159,266 + +0.5 159,268 + +0.5 159,274 - -0.9 159,274 - +0.3 159,276 - +0.3 159,284 - -0.3 159,286 + +0.1 159,435 + -0.5 159,438 + -2.0 159,438 + -1.7 159,441 - -2.4 159,441 - -0.2 159,443 + -1.4 159,451 - HP15_p187g158 0.10 -1.2 159,487 - HP15_p187g158 0.14 +1.4 159,501 + HP15_p187g158 0.15 +0.1 159,507 + HP15_p187g158 0.16 -1.0 159,507 + HP15_p187g158 0.16 -0.5 159,507 + HP15_p187g158 0.16 -0.8 159,507 + HP15_p187g158 0.16 +1.0 159,507 + HP15_p187g158 0.16 +0.7 159,507 + HP15_p187g158 0.16 -0.5 159,509 - HP15_p187g158 0.16 -0.9 159,515 - HP15_p187g158 0.16 +0.1 159,515 - HP15_p187g158 0.16 +0.4 159,515 - HP15_p187g158 0.16 +0.9 159,530 + HP15_p187g158 0.18 +0.5 159,538 - HP15_p187g158 0.18 -2.2 159,670 + HP15_p187g158 0.31 +0.1 159,670 + HP15_p187g158 0.31 +0.1 159,677 - HP15_p187g158 0.32 +2.5 159,730 + HP15_p187g158 0.37 +0.3 159,730 - HP15_p187g158 0.37 +0.1 159,748 - HP15_p187g158 0.39 +1.1 159,812 + HP15_p187g158 0.45 +0.1 159,812 + HP15_p187g158 0.45 +0.5 159,812 + HP15_p187g158 0.45 +0.8 159,814 + HP15_p187g158 0.45 +0.4 159,832 + HP15_p187g158 0.47 +0.8 159,906 + HP15_p187g158 0.54 -0.2 159,906 + HP15_p187g158 0.54 -0.6 159,909 - HP15_p187g158 0.54 +0.0 159,914 - HP15_p187g158 0.55 +2.5 159,944 + HP15_p187g158 0.58 -1.0 159,996 + HP15_p187g158 0.63 +1.6 159,996 + HP15_p187g158 0.63 -1.0 160,004 - HP15_p187g158 0.63 +1.3 160,004 - HP15_p187g158 0.63 +2.1 160,004 - HP15_p187g158 0.63 +0.4 160,012 + HP15_p187g158 0.64 +1.1 160,066 + HP15_p187g158 0.69 -2.0 160,067 - HP15_p187g158 0.69 -1.1 160,114 + HP15_p187g158 0.74 +1.1 160,122 - HP15_p187g158 0.75 -1.8 160,128 + HP15_p187g158 0.75 +0.9 160,146 - HP15_p187g158 0.77 +0.2 160,158 + HP15_p187g158 0.78 +0.2 160,187 - HP15_p187g158 0.81 -0.2 160,198 + HP15_p187g158 0.82 -1.0 160,198 + HP15_p187g158 0.82 -0.9 160,206 - HP15_p187g158 0.83 +0.5 160,208 + HP15_p187g158 0.83 +0.3 160,231 + HP15_p187g158 0.85 -1.0 160,233 + HP15_p187g158 0.85 +1.1 160,234 - HP15_p187g158 0.86 +0.6 160,236 + HP15_p187g158 0.86 +0.7 160,239 - HP15_p187g158 0.86 -0.4 160,239 - HP15_p187g158 0.86 +0.4 160,300 + +0.4 160,306 + +0.3 160,308 - -0.6 160,308 - +0.6 160,320 + +0.3 160,328 - -0.3 160,355 + +0.0 160,363 - +0.8 160,380 - +0.9 160,400 + +0.5 160,589 + +0.3 160,594 + +0.3 160,594 + +0.9 160,602 - +2.4 160,602 - +0.8 160,665 + +0.8 160,712 - +1.3 160,783 + -1.2 160,851 - HP15_p187g159 0.13 -0.1 160,860 + HP15_p187g159 0.13 +1.2 160,860 + HP15_p187g159 0.13 +0.3 160,896 - HP15_p187g159 0.15 -0.8 160,940 + HP15_p187g159 0.17 -0.7 160,958 - HP15_p187g159 0.17 +1.5 160,958 - HP15_p187g159 0.17 -1.3 160,963 - HP15_p187g159 0.18 +0.0 160,971 - HP15_p187g159 0.18 -0.0 160,994 + HP15_p187g159 0.19 -1.4 160,994 + HP15_p187g159 0.19 -1.9 161,002 - HP15_p187g159 0.19 +0.0 161,077 + HP15_p187g159 0.22 +1.5 161,090 - HP15_p187g159 0.23 +1.1 161,092 + HP15_p187g159 0.23 -0.1 161,092 - HP15_p187g159 0.23 -0.3 161,094 + HP15_p187g159 0.23 +1.1 161,107 + HP15_p187g159 0.24 -0.5 161,107 + HP15_p187g159 0.24 -1.1 161,128 + HP15_p187g159 0.25 +0.2 161,128 + HP15_p187g159 0.25 +0.7 161,172 + HP15_p187g159 0.27 +1.4 161,230 + HP15_p187g159 0.29 -1.4 161,377 - HP15_p187g159 0.35 -0.7
Or see this region's nucleotide sequence