Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g89 and HP15_p187g90 are separated by 23 nucleotides HP15_p187g90 and HP15_p187g91 are separated by 4 nucleotides HP15_p187g91 and HP15_p187g92 are separated by 151 nucleotides HP15_p187g92 and HP15_p187g93 are separated by 182 nucleotides
HP15_p187g89: HP15_p187g89 - hypothetical protein, at 86,172 to 86,300
_p187g89
HP15_p187g90: HP15_p187g90 - response regulator receiver modulated CheW protein, at 86,324 to 87,256
_p187g90
HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886
_p187g91
HP15_p187g92: HP15_p187g92 - hypothetical protein, at 89,038 to 89,142
_p187g92
HP15_p187g93: HP15_p187g93 - transcriptional activator RfaH, at 89,325 to 89,762
_p187g93
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 86.308 kb on + strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.387 kb on - strand at 86.438 kb on - strand, within HP15_p187g90 at 86.443 kb on - strand, within HP15_p187g90 at 86.472 kb on + strand, within HP15_p187g90 at 86.475 kb on - strand, within HP15_p187g90 at 86.482 kb on + strand, within HP15_p187g90 at 86.482 kb on + strand, within HP15_p187g90 at 86.490 kb on - strand, within HP15_p187g90 at 86.491 kb on + strand, within HP15_p187g90 at 86.499 kb on - strand, within HP15_p187g90 at 86.512 kb on + strand, within HP15_p187g90 at 86.519 kb on - strand, within HP15_p187g90 at 86.547 kb on + strand, within HP15_p187g90 at 86.582 kb on + strand, within HP15_p187g90 at 86.590 kb on - strand, within HP15_p187g90 at 86.599 kb on - strand, within HP15_p187g90 at 86.662 kb on + strand, within HP15_p187g90 at 86.689 kb on + strand, within HP15_p187g90 at 86.694 kb on + strand, within HP15_p187g90 at 86.702 kb on - strand, within HP15_p187g90 at 86.702 kb on - strand, within HP15_p187g90 at 86.761 kb on + strand, within HP15_p187g90 at 86.776 kb on - strand, within HP15_p187g90 at 86.787 kb on + strand, within HP15_p187g90 at 86.833 kb on + strand, within HP15_p187g90 at 86.951 kb on + strand, within HP15_p187g90 at 86.951 kb on + strand, within HP15_p187g90 at 86.959 kb on - strand, within HP15_p187g90 at 86.959 kb on - strand, within HP15_p187g90 at 87.051 kb on + strand, within HP15_p187g90 at 87.057 kb on - strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.112 kb on + strand, within HP15_p187g90 at 87.122 kb on + strand, within HP15_p187g90 at 87.155 kb on + strand, within HP15_p187g90 at 87.174 kb on - strand at 87.229 kb on + strand at 87.237 kb on - strand at 87.237 kb on - strand at 87.269 kb on + strand at 87.279 kb on + strand at 87.286 kb on + strand at 87.286 kb on + strand at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.447 kb on - strand, within HP15_p187g91 at 87.470 kb on - strand, within HP15_p187g91 at 87.536 kb on - strand, within HP15_p187g91 at 87.558 kb on + strand, within HP15_p187g91 at 87.558 kb on + strand, within HP15_p187g91 at 87.566 kb on - strand, within HP15_p187g91 at 87.568 kb on - strand, within HP15_p187g91 at 87.568 kb on - strand, within HP15_p187g91 at 87.574 kb on + strand, within HP15_p187g91 at 87.649 kb on - strand, within HP15_p187g91 at 87.649 kb on - strand, within HP15_p187g91 at 87.661 kb on - strand, within HP15_p187g91 at 87.661 kb on - strand, within HP15_p187g91 at 87.717 kb on + strand, within HP15_p187g91 at 87.725 kb on - strand, within HP15_p187g91 at 87.775 kb on + strand, within HP15_p187g91 at 87.788 kb on - strand, within HP15_p187g91 at 87.803 kb on - strand, within HP15_p187g91 at 87.823 kb on - strand, within HP15_p187g91 at 87.841 kb on - strand, within HP15_p187g91 at 87.860 kb on - strand, within HP15_p187g91 at 87.942 kb on - strand, within HP15_p187g91 at 87.942 kb on - strand, within HP15_p187g91 at 87.959 kb on + strand, within HP15_p187g91 at 88.035 kb on + strand, within HP15_p187g91 at 88.035 kb on + strand, within HP15_p187g91 at 88.041 kb on - strand, within HP15_p187g91 at 88.043 kb on - strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.083 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.088 kb on + strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.096 kb on - strand, within HP15_p187g91 at 88.110 kb on + strand, within HP15_p187g91 at 88.118 kb on - strand, within HP15_p187g91 at 88.178 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.222 kb on + strand, within HP15_p187g91 at 88.230 kb on - strand, within HP15_p187g91 at 88.250 kb on - strand, within HP15_p187g91 at 88.255 kb on + strand, within HP15_p187g91 at 88.321 kb on + strand, within HP15_p187g91 at 88.358 kb on + strand, within HP15_p187g91 at 88.358 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.364 kb on + strand, within HP15_p187g91 at 88.366 kb on - strand, within HP15_p187g91 at 88.367 kb on - strand, within HP15_p187g91 at 88.393 kb on - strand, within HP15_p187g91 at 88.398 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.453 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.668 kb on - strand, within HP15_p187g91 at 88.674 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.732 kb on + strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.769 kb on + strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.787 kb on - strand at 88.911 kb on - strand at 88.951 kb on + strand at 88.951 kb on + strand at 88.981 kb on + strand at 88.981 kb on + strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.994 kb on + strand at 89.067 kb on + strand, within HP15_p187g92 at 89.074 kb on - strand, within HP15_p187g92 at 89.095 kb on - strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.107 kb on - strand, within HP15_p187g92 at 89.143 kb on + strand at 89.147 kb on + strand at 89.203 kb on - strand at 89.206 kb on + strand at 89.213 kb on + strand at 89.219 kb on - strand at 89.220 kb on + strand at 89.243 kb on - strand at 89.256 kb on - strand at 89.290 kb on - strand at 89.337 kb on + strand at 89.383 kb on + strand, within HP15_p187g93 at 89.393 kb on + strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.414 kb on - strand, within HP15_p187g93 at 89.422 kb on + strand, within HP15_p187g93 at 89.451 kb on - strand, within HP15_p187g93 at 89.482 kb on + strand, within HP15_p187g93 at 89.501 kb on - strand, within HP15_p187g93 at 89.505 kb on + strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.603 kb on + strand, within HP15_p187g93 at 89.669 kb on + strand, within HP15_p187g93 at 89.676 kb on - strand, within HP15_p187g93 at 89.698 kb on - strand, within HP15_p187g93 at 89.782 kb on + strand at 89.782 kb on + strand at 89.782 kb on + strand at 89.785 kb on - strand at 89.785 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 86,308 + +0.9 86,387 - +0.2 86,387 - +0.7 86,387 - -0.3 86,387 - +1.5 86,438 - HP15_p187g90 0.12 -0.0 86,443 - HP15_p187g90 0.13 +1.5 86,472 + HP15_p187g90 0.16 -0.8 86,475 - HP15_p187g90 0.16 -0.0 86,482 + HP15_p187g90 0.17 +1.1 86,482 + HP15_p187g90 0.17 +2.0 86,490 - HP15_p187g90 0.18 +0.8 86,491 + HP15_p187g90 0.18 -0.5 86,499 - HP15_p187g90 0.19 -0.8 86,512 + HP15_p187g90 0.20 -0.2 86,519 - HP15_p187g90 0.21 +0.3 86,547 + HP15_p187g90 0.24 +1.2 86,582 + HP15_p187g90 0.28 +0.2 86,590 - HP15_p187g90 0.29 -0.5 86,599 - HP15_p187g90 0.29 +0.9 86,662 + HP15_p187g90 0.36 +0.1 86,689 + HP15_p187g90 0.39 +1.1 86,694 + HP15_p187g90 0.40 -0.5 86,702 - HP15_p187g90 0.41 +0.2 86,702 - HP15_p187g90 0.41 +0.0 86,761 + HP15_p187g90 0.47 -1.2 86,776 - HP15_p187g90 0.48 -0.6 86,787 + HP15_p187g90 0.50 +0.3 86,833 + HP15_p187g90 0.55 -1.1 86,951 + HP15_p187g90 0.67 -0.3 86,951 + HP15_p187g90 0.67 -0.8 86,959 - HP15_p187g90 0.68 -0.5 86,959 - HP15_p187g90 0.68 +0.2 87,051 + HP15_p187g90 0.78 -1.5 87,057 - HP15_p187g90 0.79 +0.9 87,112 + HP15_p187g90 0.84 +0.1 87,112 + HP15_p187g90 0.84 +0.9 87,112 + HP15_p187g90 0.84 +1.3 87,112 + HP15_p187g90 0.84 -0.2 87,122 + HP15_p187g90 0.86 -0.6 87,155 + HP15_p187g90 0.89 -0.7 87,174 - -1.6 87,229 + +0.1 87,237 - +0.9 87,237 - -2.9 87,269 + +0.0 87,279 + +1.7 87,286 + +0.3 87,286 + -0.1 87,447 - HP15_p187g91 0.11 +0.2 87,447 - HP15_p187g91 0.11 +0.8 87,447 - HP15_p187g91 0.11 +0.8 87,447 - HP15_p187g91 0.11 +1.1 87,470 - HP15_p187g91 0.13 +0.2 87,536 - HP15_p187g91 0.17 +1.1 87,558 + HP15_p187g91 0.18 +0.2 87,558 + HP15_p187g91 0.18 -1.3 87,566 - HP15_p187g91 0.19 -1.1 87,568 - HP15_p187g91 0.19 +1.4 87,568 - HP15_p187g91 0.19 +1.5 87,574 + HP15_p187g91 0.19 -0.1 87,649 - HP15_p187g91 0.24 +2.3 87,649 - HP15_p187g91 0.24 +1.3 87,661 - HP15_p187g91 0.25 -0.8 87,661 - HP15_p187g91 0.25 +1.8 87,717 + HP15_p187g91 0.28 -2.0 87,725 - HP15_p187g91 0.29 +0.7 87,775 + HP15_p187g91 0.32 -0.3 87,788 - HP15_p187g91 0.32 +1.5 87,803 - HP15_p187g91 0.33 +1.2 87,823 - HP15_p187g91 0.35 +0.8 87,841 - HP15_p187g91 0.36 -0.0 87,860 - HP15_p187g91 0.37 -0.1 87,942 - HP15_p187g91 0.42 +1.0 87,942 - HP15_p187g91 0.42 -0.3 87,959 + HP15_p187g91 0.43 +0.7 88,035 + HP15_p187g91 0.48 +1.1 88,035 + HP15_p187g91 0.48 -0.1 88,041 - HP15_p187g91 0.48 -1.3 88,043 - HP15_p187g91 0.48 -1.9 88,083 + HP15_p187g91 0.51 -1.5 88,083 + HP15_p187g91 0.51 +0.1 88,088 + HP15_p187g91 0.51 +1.0 88,088 + HP15_p187g91 0.51 +0.2 88,088 + HP15_p187g91 0.51 -1.8 88,088 + HP15_p187g91 0.51 -0.5 88,088 + HP15_p187g91 0.51 +0.9 88,088 + HP15_p187g91 0.51 +1.1 88,096 - HP15_p187g91 0.51 -0.5 88,096 - HP15_p187g91 0.51 +0.3 88,096 - HP15_p187g91 0.51 +0.5 88,096 - HP15_p187g91 0.51 +0.3 88,110 + HP15_p187g91 0.52 -0.8 88,118 - HP15_p187g91 0.53 -1.4 88,178 + HP15_p187g91 0.56 +0.2 88,222 + HP15_p187g91 0.59 -1.3 88,222 + HP15_p187g91 0.59 +0.2 88,222 + HP15_p187g91 0.59 +1.7 88,230 - HP15_p187g91 0.60 +0.6 88,250 - HP15_p187g91 0.61 +0.5 88,255 + HP15_p187g91 0.61 +0.1 88,321 + HP15_p187g91 0.65 +0.3 88,358 + HP15_p187g91 0.67 -0.5 88,358 + HP15_p187g91 0.67 -0.8 88,359 + HP15_p187g91 0.68 +0.6 88,359 + HP15_p187g91 0.68 -0.0 88,359 + HP15_p187g91 0.68 +0.6 88,364 + HP15_p187g91 0.68 +0.4 88,366 - HP15_p187g91 0.68 -1.4 88,367 - HP15_p187g91 0.68 +0.3 88,393 - HP15_p187g91 0.70 +0.7 88,398 + HP15_p187g91 0.70 +2.1 88,406 + HP15_p187g91 0.70 +0.5 88,406 + HP15_p187g91 0.70 +0.7 88,409 + HP15_p187g91 0.71 -0.5 88,409 + HP15_p187g91 0.71 +0.8 88,414 - HP15_p187g91 0.71 -0.7 88,414 - HP15_p187g91 0.71 -0.6 88,414 - HP15_p187g91 0.71 +1.4 88,414 - HP15_p187g91 0.71 -0.4 88,417 - HP15_p187g91 0.71 +1.4 88,417 - HP15_p187g91 0.71 +0.8 88,453 + HP15_p187g91 0.73 +0.7 88,660 + HP15_p187g91 0.86 -0.4 88,660 + HP15_p187g91 0.86 +1.9 88,660 + HP15_p187g91 0.86 +1.1 88,668 - HP15_p187g91 0.87 +0.2 88,674 + HP15_p187g91 0.87 -0.6 88,682 + HP15_p187g91 0.87 -1.6 88,682 + HP15_p187g91 0.87 -1.0 88,732 + +0.4 88,740 - +0.5 88,740 - +1.2 88,740 - +1.3 88,769 + +0.9 88,777 - +0.7 88,777 - +0.8 88,777 - -2.1 88,787 - +0.6 88,911 - +0.6 88,951 + -0.4 88,951 + +0.6 88,981 + +0.8 88,981 + -0.5 88,989 - +0.1 88,989 - +0.2 88,989 - -0.5 88,994 + -0.3 89,067 + HP15_p187g92 0.28 +0.9 89,074 - HP15_p187g92 0.34 +0.1 89,095 - HP15_p187g92 0.54 +2.1 89,099 + HP15_p187g92 0.58 +0.9 89,099 + HP15_p187g92 0.58 +1.5 89,107 - HP15_p187g92 0.66 -0.4 89,143 + +1.2 89,147 + -0.6 89,203 - +0.3 89,206 + +0.5 89,213 + +0.7 89,219 - +0.6 89,220 + +1.7 89,243 - +0.2 89,256 - +0.0 89,290 - +0.9 89,337 + +0.4 89,383 + HP15_p187g93 0.13 +0.9 89,393 + HP15_p187g93 0.16 -0.6 89,401 - HP15_p187g93 0.17 -0.5 89,401 - HP15_p187g93 0.17 +0.7 89,414 - HP15_p187g93 0.20 +0.5 89,422 + HP15_p187g93 0.22 +1.1 89,451 - HP15_p187g93 0.29 +0.3 89,482 + HP15_p187g93 0.36 +0.5 89,501 - HP15_p187g93 0.40 -0.2 89,505 + HP15_p187g93 0.41 -1.3 89,554 - HP15_p187g93 0.52 -0.4 89,554 - HP15_p187g93 0.52 -2.1 89,603 + HP15_p187g93 0.63 +0.1 89,669 + HP15_p187g93 0.79 +0.2 89,676 - HP15_p187g93 0.80 -0.0 89,698 - HP15_p187g93 0.85 +1.0 89,782 + -1.0 89,782 + +0.1 89,782 + -0.4 89,785 - +0.1 89,785 - -0.3 89,790 - +0.8 89,790 - -2.1 89,790 - -1.3 89,823 + +0.3 89,823 + +0.5 89,823 + +0.6 89,836 - +0.6
Or see this region's nucleotide sequence