Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g51

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g49 and HP15_p187g50 are separated by 0 nucleotidesHP15_p187g50 and HP15_p187g51 overlap by 4 nucleotidesHP15_p187g51 and HP15_p187g52 are separated by 94 nucleotidesHP15_p187g52 and HP15_p187g53 are separated by 452 nucleotides HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134 _p187g49 HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019 _p187g50 HP15_p187g51: HP15_p187g51 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 44,016 to 44,561 _p187g51 HP15_p187g52: HP15_p187g52 - hypothetical protein, at 44,656 to 44,775 _p187g52 HP15_p187g53: HP15_p187g53 - polysaccharide biosynthesis-like protein, at 45,228 to 46,652 _p187g53 Position (kb) 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 43.053 kb on + strand, within HP15_p187g49at 43.053 kb on + strand, within HP15_p187g49at 43.061 kb on - strand, within HP15_p187g49at 43.071 kb on + strand, within HP15_p187g49at 43.117 kb on - strandat 43.142 kb on + strandat 43.142 kb on + strandat 43.150 kb on - strandat 43.173 kb on + strandat 43.196 kb on + strandat 43.204 kb on - strandat 43.386 kb on - strand, within HP15_p187g50at 43.393 kb on + strand, within HP15_p187g50at 43.396 kb on - strand, within HP15_p187g50at 43.401 kb on - strand, within HP15_p187g50at 43.401 kb on - strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.436 kb on + strand, within HP15_p187g50at 43.442 kb on + strand, within HP15_p187g50at 43.442 kb on + strand, within HP15_p187g50at 43.444 kb on - strand, within HP15_p187g50at 43.450 kb on - strand, within HP15_p187g50at 43.450 kb on - strand, within HP15_p187g50at 43.461 kb on + strand, within HP15_p187g50at 43.472 kb on + strand, within HP15_p187g50at 43.480 kb on - strand, within HP15_p187g50at 43.543 kb on - strand, within HP15_p187g50at 43.568 kb on - strand, within HP15_p187g50at 43.601 kb on + strand, within HP15_p187g50at 43.649 kb on + strand, within HP15_p187g50at 43.745 kb on + strand, within HP15_p187g50at 43.762 kb on - strand, within HP15_p187g50at 43.782 kb on - strand, within HP15_p187g50at 44.143 kb on + strand, within HP15_p187g51at 44.151 kb on - strand, within HP15_p187g51at 44.161 kb on - strand, within HP15_p187g51at 44.161 kb on - strand, within HP15_p187g51at 44.166 kb on - strand, within HP15_p187g51at 44.219 kb on + strand, within HP15_p187g51at 44.222 kb on - strand, within HP15_p187g51at 44.227 kb on - strand, within HP15_p187g51at 44.243 kb on + strand, within HP15_p187g51at 44.262 kb on + strand, within HP15_p187g51at 44.262 kb on + strand, within HP15_p187g51at 44.263 kb on + strand, within HP15_p187g51at 44.271 kb on - strand, within HP15_p187g51at 44.308 kb on + strand, within HP15_p187g51at 44.308 kb on + strand, within HP15_p187g51at 44.316 kb on - strand, within HP15_p187g51at 44.316 kb on - strand, within HP15_p187g51at 44.332 kb on + strand, within HP15_p187g51at 44.339 kb on + strand, within HP15_p187g51at 44.344 kb on + strand, within HP15_p187g51at 44.347 kb on - strand, within HP15_p187g51at 44.391 kb on - strand, within HP15_p187g51at 44.425 kb on - strand, within HP15_p187g51at 44.457 kb on + strand, within HP15_p187g51at 44.465 kb on - strand, within HP15_p187g51at 44.494 kb on + strand, within HP15_p187g51at 44.534 kb on + strandat 44.534 kb on + strandat 44.537 kb on - strandat 44.537 kb on - strandat 44.667 kb on - strandat 44.691 kb on + strand, within HP15_p187g52at 44.758 kb on + strand, within HP15_p187g52at 44.775 kb on + strandat 44.775 kb on + strandat 44.775 kb on + strandat 44.775 kb on + strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.884 kb on + strandat 44.906 kb on - strandat 44.910 kb on + strandat 44.942 kb on - strandat 44.942 kb on - strandat 44.942 kb on - strandat 44.950 kb on + strandat 44.950 kb on - strandat 44.961 kb on + strandat 44.965 kb on - strandat 44.965 kb on - strandat 45.042 kb on + strandat 45.042 kb on + strandat 45.050 kb on - strandat 45.052 kb on + strandat 45.068 kb on + strandat 45.076 kb on + strandat 45.084 kb on - strandat 45.092 kb on + strandat 45.092 kb on + strandat 45.102 kb on - strandat 45.113 kb on + strandat 45.128 kb on - strandat 45.220 kb on + strandat 45.228 kb on - strandat 45.228 kb on - strandat 45.275 kb on - strandat 45.324 kb on - strandat 45.333 kb on - strandat 45.359 kb on + strandat 45.365 kb on - strandat 45.365 kb on - strandat 45.365 kb on - strandat 45.367 kb on - strandat 45.367 kb on - strandat 45.367 kb on - strandat 45.380 kb on + strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.400 kb on + strand, within HP15_p187g53at 45.400 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.425 kb on + strand, within HP15_p187g53at 45.426 kb on - strand, within HP15_p187g53at 45.426 kb on - strand, within HP15_p187g53at 45.432 kb on + strand, within HP15_p187g53

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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43,053 + HP15_p187g49 0.78 -1.4
43,053 + HP15_p187g49 0.78 -1.9
43,061 - HP15_p187g49 0.80 -0.9
43,071 + HP15_p187g49 0.83 +0.2
43,117 - +1.8
43,142 + +2.1
43,142 + -0.1
43,150 - +0.7
43,173 + -3.0
43,196 + -1.5
43,204 - -0.0
43,386 - HP15_p187g50 0.28 -0.6
43,393 + HP15_p187g50 0.29 +0.5
43,396 - HP15_p187g50 0.29 -2.6
43,401 - HP15_p187g50 0.30 -2.2
43,401 - HP15_p187g50 0.30 +0.6
43,436 + HP15_p187g50 0.34 +0.7
43,436 + HP15_p187g50 0.34 -1.1
43,436 + HP15_p187g50 0.34 +0.5
43,442 + HP15_p187g50 0.35 -1.7
43,442 + HP15_p187g50 0.35 -0.7
43,444 - HP15_p187g50 0.35 -1.1
43,450 - HP15_p187g50 0.36 +0.1
43,450 - HP15_p187g50 0.36 -1.5
43,461 + HP15_p187g50 0.37 -3.4
43,472 + HP15_p187g50 0.38 +1.5
43,480 - HP15_p187g50 0.39 -2.3
43,543 - HP15_p187g50 0.46 -2.2
43,568 - HP15_p187g50 0.49 +0.4
43,601 + HP15_p187g50 0.53 -2.4
43,649 + HP15_p187g50 0.58 -0.5
43,745 + HP15_p187g50 0.69 +0.7
43,762 - HP15_p187g50 0.71 -1.4
43,782 - HP15_p187g50 0.73 -1.5
44,143 + HP15_p187g51 0.23 -1.4
44,151 - HP15_p187g51 0.25 -0.8
44,161 - HP15_p187g51 0.27 -0.1
44,161 - HP15_p187g51 0.27 +0.8
44,166 - HP15_p187g51 0.27 -3.0
44,219 + HP15_p187g51 0.37 -0.2
44,222 - HP15_p187g51 0.38 +0.7
44,227 - HP15_p187g51 0.39 +0.5
44,243 + HP15_p187g51 0.42 +0.3
44,262 + HP15_p187g51 0.45 -2.6
44,262 + HP15_p187g51 0.45 -3.8
44,263 + HP15_p187g51 0.45 -0.9
44,271 - HP15_p187g51 0.47 -1.5
44,308 + HP15_p187g51 0.53 -1.2
44,308 + HP15_p187g51 0.53 +1.1
44,316 - HP15_p187g51 0.55 -2.4
44,316 - HP15_p187g51 0.55 -1.4
44,332 + HP15_p187g51 0.58 -2.2
44,339 + HP15_p187g51 0.59 +0.3
44,344 + HP15_p187g51 0.60 -3.3
44,347 - HP15_p187g51 0.61 -2.0
44,391 - HP15_p187g51 0.69 -0.1
44,425 - HP15_p187g51 0.75 +0.9
44,457 + HP15_p187g51 0.81 -0.0
44,465 - HP15_p187g51 0.82 -0.0
44,494 + HP15_p187g51 0.88 -1.8
44,534 + +1.9
44,534 + -0.6
44,537 - -2.6
44,537 - +0.8
44,667 - +2.0
44,691 + HP15_p187g52 0.29 -0.9
44,758 + HP15_p187g52 0.85 +0.8
44,775 + -1.2
44,775 + +0.9
44,775 + +0.3
44,775 + -1.5
44,783 - -1.3
44,783 - -1.0
44,783 - -1.3
44,783 - +1.3
44,783 - +0.5
44,783 - -1.5
44,783 - +0.4
44,884 + -0.5
44,906 - -0.7
44,910 + +0.2
44,942 - -1.0
44,942 - -1.7
44,942 - -1.2
44,950 + -1.6
44,950 - +1.1
44,961 + -0.3
44,965 - -1.4
44,965 - -0.0
45,042 + +1.3
45,042 + +1.1
45,050 - -1.5
45,052 + -1.0
45,068 + +1.3
45,076 + -0.4
45,084 - -0.3
45,092 + -1.0
45,092 + +0.5
45,102 - +2.5
45,113 + +0.2
45,128 - +0.2
45,220 + +0.4
45,228 - +0.7
45,228 - +2.1
45,275 - -1.2
45,324 - +0.5
45,333 - -0.4
45,359 + +1.8
45,365 - -0.7
45,365 - -1.7
45,365 - -1.1
45,367 - -2.1
45,367 - +1.0
45,367 - +0.3
45,380 + HP15_p187g53 0.11 -0.7
45,388 - HP15_p187g53 0.11 -0.8
45,388 - HP15_p187g53 0.11 -1.4
45,388 - HP15_p187g53 0.11 -2.0
45,400 + HP15_p187g53 0.12 +0.2
45,400 + HP15_p187g53 0.12 +2.7
45,418 + HP15_p187g53 0.13 -2.0
45,418 + HP15_p187g53 0.13 -3.0
45,418 + HP15_p187g53 0.13 +0.7
45,418 + HP15_p187g53 0.13 -1.2
45,418 + HP15_p187g53 0.13 -0.2
45,425 + HP15_p187g53 0.14 -1.8
45,426 - HP15_p187g53 0.14 -2.6
45,426 - HP15_p187g53 0.14 -0.6
45,432 + HP15_p187g53 0.14 -2.8

Or see this region's nucleotide sequence