Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g33

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g30 and HP15_p42g31 are separated by 13 nucleotidesHP15_p42g31 and HP15_p42g32 are separated by 144 nucleotidesHP15_p42g32 and HP15_p42g33 overlap by 4 nucleotidesHP15_p42g33 and HP15_p42g34 are separated by 20 nucleotidesHP15_p42g34 and HP15_p42g35 are separated by 6 nucleotidesHP15_p42g35 and HP15_p42g36 are separated by 4 nucleotides HP15_p42g30: HP15_p42g30 - YacC protein, at 25,592 to 26,452 _p42g30 HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819 _p42g31 HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095 _p42g32 HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727 _p42g33 HP15_p42g34: HP15_p42g34 - DNA-binding protein, at 27,748 to 28,131 _p42g34 HP15_p42g35: HP15_p42g35 - membrane protein, at 28,138 to 28,644 _p42g35 HP15_p42g36: HP15_p42g36 - hypothetical protein, at 28,649 to 28,759 _p42g36 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.137 kb on + strand, within HP15_p42g30at 26.150 kb on - strand, within HP15_p42g30at 26.162 kb on - strand, within HP15_p42g30at 26.183 kb on + strand, within HP15_p42g30at 26.242 kb on + strand, within HP15_p42g30at 26.250 kb on - strand, within HP15_p42g30at 26.290 kb on + strand, within HP15_p42g30at 26.290 kb on + strand, within HP15_p42g30at 26.303 kb on + strand, within HP15_p42g30at 26.337 kb on + strand, within HP15_p42g30at 26.343 kb on + strand, within HP15_p42g30at 26.409 kb on + strandat 26.462 kb on - strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.493 kb on - strandat 26.493 kb on - strandat 26.493 kb on - strandat 26.605 kb on + strand, within HP15_p42g31at 26.607 kb on + strand, within HP15_p42g31at 26.607 kb on + strand, within HP15_p42g31at 26.661 kb on - strand, within HP15_p42g31at 26.662 kb on - strand, within HP15_p42g31at 26.663 kb on + strand, within HP15_p42g31at 26.690 kb on + strand, within HP15_p42g31at 26.698 kb on - strand, within HP15_p42g31at 26.767 kb on - strand, within HP15_p42g31at 26.783 kb on + strand, within HP15_p42g31at 26.791 kb on + strandat 26.791 kb on - strandat 26.994 kb on + strand, within HP15_p42g32at 27.014 kb on + strand, within HP15_p42g32at 27.027 kb on - strand, within HP15_p42g32at 27.133 kb on + strandat 27.179 kb on - strand, within HP15_p42g33at 27.179 kb on - strand, within HP15_p42g33at 27.181 kb on - strand, within HP15_p42g33at 27.192 kb on - strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.320 kb on - strand, within HP15_p42g33at 27.330 kb on + strand, within HP15_p42g33at 27.343 kb on - strand, within HP15_p42g33at 27.415 kb on + strand, within HP15_p42g33at 27.457 kb on + strand, within HP15_p42g33at 27.513 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.554 kb on - strand, within HP15_p42g33at 27.651 kb on + strand, within HP15_p42g33at 27.659 kb on - strand, within HP15_p42g33at 27.745 kb on + strandat 27.879 kb on - strand, within HP15_p42g34at 27.880 kb on + strand, within HP15_p42g34at 27.887 kb on + strand, within HP15_p42g34at 27.887 kb on + strand, within HP15_p42g34at 27.905 kb on - strand, within HP15_p42g34at 27.927 kb on + strand, within HP15_p42g34at 27.962 kb on + strand, within HP15_p42g34at 27.962 kb on + strand, within HP15_p42g34at 27.967 kb on + strand, within HP15_p42g34at 27.970 kb on - strand, within HP15_p42g34at 27.970 kb on - strand, within HP15_p42g34at 28.005 kb on - strand, within HP15_p42g34at 28.012 kb on + strand, within HP15_p42g34at 28.012 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.025 kb on + strand, within HP15_p42g34at 28.027 kb on - strand, within HP15_p42g34at 28.027 kb on - strand, within HP15_p42g34at 28.062 kb on - strand, within HP15_p42g34at 28.138 kb on - strandat 28.179 kb on + strandat 28.250 kb on - strand, within HP15_p42g35at 28.281 kb on + strand, within HP15_p42g35at 28.289 kb on - strand, within HP15_p42g35at 28.359 kb on - strand, within HP15_p42g35at 28.361 kb on + strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.414 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.431 kb on - strand, within HP15_p42g35at 28.433 kb on + strand, within HP15_p42g35at 28.436 kb on - strand, within HP15_p42g35at 28.442 kb on - strand, within HP15_p42g35at 28.443 kb on - strand, within HP15_p42g35at 28.626 kb on + strandat 28.653 kb on - strandat 28.699 kb on - strand, within HP15_p42g36

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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26,137 + HP15_p42g30 0.63 +0.3
26,150 - HP15_p42g30 0.65 +0.5
26,162 - HP15_p42g30 0.66 -0.3
26,183 + HP15_p42g30 0.69 +0.2
26,242 + HP15_p42g30 0.75 +0.9
26,250 - HP15_p42g30 0.76 -0.6
26,290 + HP15_p42g30 0.81 +1.1
26,290 + HP15_p42g30 0.81 +1.0
26,303 + HP15_p42g30 0.83 +0.7
26,337 + HP15_p42g30 0.87 +0.3
26,343 + HP15_p42g30 0.87 +2.3
26,409 + +0.0
26,462 - +1.0
26,485 + +0.7
26,485 + -0.6
26,485 + +0.5
26,485 + +0.5
26,485 + +0.6
26,493 - +0.3
26,493 - +0.7
26,493 - +0.4
26,605 + HP15_p42g31 0.39 +0.9
26,607 + HP15_p42g31 0.40 +0.8
26,607 + HP15_p42g31 0.40 -1.5
26,661 - HP15_p42g31 0.55 +0.5
26,662 - HP15_p42g31 0.55 +0.0
26,663 + HP15_p42g31 0.56 +0.0
26,690 + HP15_p42g31 0.63 +0.5
26,698 - HP15_p42g31 0.66 +1.0
26,767 - HP15_p42g31 0.85 +1.0
26,783 + HP15_p42g31 0.90 +1.1
26,791 + +0.7
26,791 - +1.1
26,994 + HP15_p42g32 0.23 -0.6
27,014 + HP15_p42g32 0.38 -1.4
27,027 - HP15_p42g32 0.48 -0.4
27,133 + -0.6
27,179 - HP15_p42g33 0.14 -0.4
27,179 - HP15_p42g33 0.14 +0.9
27,181 - HP15_p42g33 0.14 +1.6
27,192 - HP15_p42g33 0.16 -1.0
27,252 + HP15_p42g33 0.25 +0.7
27,252 + HP15_p42g33 0.25 +1.4
27,260 - HP15_p42g33 0.26 +1.3
27,260 - HP15_p42g33 0.26 -0.6
27,320 - HP15_p42g33 0.36 +1.2
27,330 + HP15_p42g33 0.37 -0.9
27,343 - HP15_p42g33 0.39 +0.3
27,415 + HP15_p42g33 0.51 -0.6
27,457 + HP15_p42g33 0.57 +1.0
27,513 + HP15_p42g33 0.66 -2.0
27,546 + HP15_p42g33 0.71 -0.6
27,546 + HP15_p42g33 0.71 -0.8
27,546 + HP15_p42g33 0.71 +0.2
27,546 + HP15_p42g33 0.71 +2.0
27,554 - HP15_p42g33 0.73 +0.5
27,651 + HP15_p42g33 0.88 -0.2
27,659 - HP15_p42g33 0.89 -0.7
27,745 + +0.5
27,879 - HP15_p42g34 0.34 +1.0
27,880 + HP15_p42g34 0.34 -0.5
27,887 + HP15_p42g34 0.36 +0.3
27,887 + HP15_p42g34 0.36 -0.5
27,905 - HP15_p42g34 0.41 +0.5
27,927 + HP15_p42g34 0.47 +0.8
27,962 + HP15_p42g34 0.56 +0.0
27,962 + HP15_p42g34 0.56 -0.6
27,967 + HP15_p42g34 0.57 +1.1
27,970 - HP15_p42g34 0.58 +1.3
27,970 - HP15_p42g34 0.58 -1.0
28,005 - HP15_p42g34 0.67 +0.9
28,012 + HP15_p42g34 0.69 -0.4
28,012 + HP15_p42g34 0.69 +1.1
28,019 + HP15_p42g34 0.71 -0.5
28,019 + HP15_p42g34 0.71 +2.8
28,019 + HP15_p42g34 0.71 +0.9
28,025 + HP15_p42g34 0.72 -0.4
28,027 - HP15_p42g34 0.73 +0.6
28,027 - HP15_p42g34 0.73 -0.1
28,062 - HP15_p42g34 0.82 -0.9
28,138 - -0.6
28,179 + +0.3
28,250 - HP15_p42g35 0.22 +0.0
28,281 + HP15_p42g35 0.28 +0.1
28,289 - HP15_p42g35 0.30 -0.8
28,359 - HP15_p42g35 0.44 -0.3
28,361 + HP15_p42g35 0.44 +1.3
28,369 - HP15_p42g35 0.46 +0.5
28,369 - HP15_p42g35 0.46 +0.2
28,369 - HP15_p42g35 0.46 -0.8
28,414 + HP15_p42g35 0.54 +0.5
28,415 + HP15_p42g35 0.55 -0.3
28,415 + HP15_p42g35 0.55 -0.2
28,423 - HP15_p42g35 0.56 -1.1
28,423 - HP15_p42g35 0.56 -0.0
28,423 - HP15_p42g35 0.56 -0.4
28,428 + HP15_p42g35 0.57 -0.3
28,428 + HP15_p42g35 0.57 -1.7
28,431 - HP15_p42g35 0.58 +0.3
28,433 + HP15_p42g35 0.58 -0.2
28,436 - HP15_p42g35 0.59 -1.0
28,442 - HP15_p42g35 0.60 +0.1
28,443 - HP15_p42g35 0.60 +0.6
28,626 + +1.2
28,653 - -0.8
28,699 - HP15_p42g36 0.45 +0.0

Or see this region's nucleotide sequence