Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3749 and HP15_3750 overlap by 8 nucleotides HP15_3750 and HP15_3751 are separated by 81 nucleotides HP15_3751 and HP15_3752 are separated by 4 nucleotides HP15_3752 and HP15_3753 are separated by 112 nucleotides
HP15_3749: HP15_3749 - coproporphyrinogen III oxidase, aerobic, at 3,970,651 to 3,971,145
_3749
HP15_3750: HP15_3750 - shikimate dehydrogenase, at 3,971,138 to 3,971,965
_3750
HP15_3751: HP15_3751 - MotA/TolQ/ExbB proton channel, at 3,972,047 to 3,972,793
_3751
HP15_3752: HP15_3752 - flagellar motor protein MotB, at 3,972,798 to 3,973,631
_3752
HP15_3753: HP15_3753 - conserved hypothetical protein, at 3,973,744 to 3,974,061
_3753
Position (kb)
3972
3973 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3971.978 kb on + strand at 3972.065 kb on - strand at 3972.134 kb on - strand, within HP15_3751 at 3972.134 kb on - strand, within HP15_3751 at 3972.150 kb on + strand, within HP15_3751 at 3972.150 kb on + strand, within HP15_3751 at 3972.158 kb on - strand, within HP15_3751 at 3972.192 kb on + strand, within HP15_3751 at 3972.233 kb on - strand, within HP15_3751 at 3972.271 kb on + strand, within HP15_3751 at 3972.271 kb on + strand, within HP15_3751 at 3972.279 kb on - strand, within HP15_3751 at 3972.407 kb on + strand, within HP15_3751 at 3972.415 kb on - strand, within HP15_3751 at 3972.435 kb on - strand, within HP15_3751 at 3972.435 kb on - strand, within HP15_3751 at 3972.449 kb on - strand, within HP15_3751 at 3972.507 kb on - strand, within HP15_3751 at 3972.517 kb on + strand, within HP15_3751 at 3972.543 kb on + strand, within HP15_3751 at 3972.546 kb on - strand, within HP15_3751 at 3972.554 kb on + strand, within HP15_3751 at 3972.571 kb on + strand, within HP15_3751 at 3972.579 kb on - strand, within HP15_3751 at 3972.586 kb on - strand, within HP15_3751 at 3972.616 kb on + strand, within HP15_3751 at 3972.645 kb on - strand, within HP15_3751 at 3972.750 kb on + strand at 3972.750 kb on + strand at 3972.755 kb on + strand at 3972.765 kb on - strand at 3972.848 kb on + strand at 3972.946 kb on - strand, within HP15_3752 at 3972.970 kb on + strand, within HP15_3752 at 3973.087 kb on + strand, within HP15_3752 at 3973.174 kb on + strand, within HP15_3752 at 3973.194 kb on + strand, within HP15_3752 at 3973.388 kb on + strand, within HP15_3752 at 3973.438 kb on - strand, within HP15_3752 at 3973.535 kb on - strand, within HP15_3752 at 3973.642 kb on - strand at 3973.677 kb on + strand at 3973.691 kb on + strand at 3973.691 kb on + strand at 3973.699 kb on - strand at 3973.744 kb on - strand at 3973.768 kb on - strand at 3973.780 kb on + strand, within HP15_3753
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 3,971,978 + -0.7 3,972,065 - +1.1 3,972,134 - HP15_3751 0.12 +1.6 3,972,134 - HP15_3751 0.12 +1.4 3,972,150 + HP15_3751 0.14 +1.8 3,972,150 + HP15_3751 0.14 +1.7 3,972,158 - HP15_3751 0.15 +0.2 3,972,192 + HP15_3751 0.19 +1.0 3,972,233 - HP15_3751 0.25 +1.5 3,972,271 + HP15_3751 0.30 +1.2 3,972,271 + HP15_3751 0.30 +1.2 3,972,279 - HP15_3751 0.31 +1.7 3,972,407 + HP15_3751 0.48 +2.0 3,972,415 - HP15_3751 0.49 -0.3 3,972,435 - HP15_3751 0.52 +2.3 3,972,435 - HP15_3751 0.52 +0.4 3,972,449 - HP15_3751 0.54 +0.2 3,972,507 - HP15_3751 0.62 +0.8 3,972,517 + HP15_3751 0.63 -0.7 3,972,543 + HP15_3751 0.66 +0.6 3,972,546 - HP15_3751 0.67 -1.1 3,972,554 + HP15_3751 0.68 +1.8 3,972,571 + HP15_3751 0.70 -2.3 3,972,579 - HP15_3751 0.71 +1.0 3,972,586 - HP15_3751 0.72 +1.2 3,972,616 + HP15_3751 0.76 -0.0 3,972,645 - HP15_3751 0.80 +0.4 3,972,750 + -1.1 3,972,750 + +0.9 3,972,755 + -1.1 3,972,765 - +1.3 3,972,848 + +0.2 3,972,946 - HP15_3752 0.18 +1.7 3,972,970 + HP15_3752 0.21 +1.3 3,973,087 + HP15_3752 0.35 +2.0 3,973,174 + HP15_3752 0.45 +2.5 3,973,194 + HP15_3752 0.47 +2.1 3,973,388 + HP15_3752 0.71 +2.8 3,973,438 - HP15_3752 0.77 +1.3 3,973,535 - HP15_3752 0.88 +1.4 3,973,642 - +1.0 3,973,677 + -0.3 3,973,691 + +0.3 3,973,691 + -0.1 3,973,699 - -0.2 3,973,744 - -2.5 3,973,768 - -1.2 3,973,780 + HP15_3753 0.11 +0.3
Or see this region's nucleotide sequence