Strain Fitness in Marinobacter adhaerens HP15 around HP15_3729

Experiment: monoculture; Experiment A, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 7
3,947,789	+		HP15_3728	0.58	-2.6
3,947,814	+		HP15_3728	0.60	+0.8
3,947,814	+		HP15_3728	0.60	-1.4
3,947,822	-		HP15_3728	0.60	-0.5
3,947,900	+		HP15_3728	0.63	-1.8
3,947,940	-		HP15_3728	0.65	+0.5
3,947,967	-		HP15_3728	0.66	-1.1
3,948,121	+		HP15_3728	0.72	+0.4
3,948,121	+		HP15_3728	0.72	+2.1
3,948,204	+		HP15_3728	0.76	-0.6
3,948,212	-		HP15_3728	0.76	+0.4
3,948,226	+		HP15_3728	0.77	+0.6
3,948,235	+		HP15_3728	0.77	-0.2
3,948,240	+		HP15_3728	0.78	-0.7
3,948,360	+		HP15_3728	0.83	-0.5
3,948,498	-		HP15_3728	0.88	-0.7
3,948,498	-		HP15_3728	0.88	+0.7
3,948,590	-				+0.8
3,948,661	-				-0.3
3,948,665	+				-0.1
3,948,756	+				-0.2
3,948,756	+				-0.3
3,948,758	+				-0.3
3,948,764	-				+3.3
3,948,766	+				-1.5
3,948,774	-				+0.6
3,948,852	+				-2.7
3,948,933	+				+0.7
3,948,994	+		HP15_3729	0.10	+0.1
3,949,069	+		HP15_3729	0.14	+0.7
3,949,087	-		HP15_3729	0.15	+1.4
3,949,110	-		HP15_3729	0.16	+1.2
3,949,154	-		HP15_3729	0.18	+1.4
3,949,226	+		HP15_3729	0.22	+0.6
3,949,269	+		HP15_3729	0.24	+0.5
3,949,350	-		HP15_3729	0.28	+1.5
3,949,362	+		HP15_3729	0.28	-0.3
3,949,373	+		HP15_3729	0.29	+2.1
3,949,381	+		HP15_3729	0.29	-0.4
3,949,381	-		HP15_3729	0.29	+1.6
3,949,389	-		HP15_3729	0.30	-0.3
3,949,425	+		HP15_3729	0.31	-0.2
3,949,425	+		HP15_3729	0.31	+2.9
3,949,433	-		HP15_3729	0.32	+1.0
3,949,433	-		HP15_3729	0.32	-0.6
3,949,452	-		HP15_3729	0.33	+0.7
3,949,650	-		HP15_3729	0.42	+2.5
3,949,776	-		HP15_3729	0.48	+0.1
3,949,812	+		HP15_3729	0.50	+0.0
3,949,815	+		HP15_3729	0.50	+0.3
3,949,856	-		HP15_3729	0.52	+0.4
3,949,860	+		HP15_3729	0.53	+0.4
3,949,868	-		HP15_3729	0.53	+1.8
3,949,868	-		HP15_3729	0.53	-0.5
3,949,985	+		HP15_3729	0.59	-1.9
3,950,059	+		HP15_3729	0.62	+0.8
3,950,067	-		HP15_3729	0.63	+1.0
3,950,169	+		HP15_3729	0.68	+0.5
3,950,188	+		HP15_3729	0.68	-0.3
3,950,231	-		HP15_3729	0.71	+0.6
3,950,248	-		HP15_3729	0.71	+0.6
3,950,253	-		HP15_3729	0.72	+0.8
3,950,253	-		HP15_3729	0.72	-0.1
3,950,262	-		HP15_3729	0.72	-0.2
3,950,283	-		HP15_3729	0.73	+0.8
3,950,320	-		HP15_3729	0.75	+0.6
3,950,347	+		HP15_3729	0.76	-0.3
3,950,466	-		HP15_3729	0.82	+0.3
3,950,475	-		HP15_3729	0.82	+0.7
3,950,565	-		HP15_3729	0.87	-0.1
3,950,623	+		HP15_3729	0.90	+0.2
3,950,640	-				+1.3
3,950,672	+				-0.2
3,950,672	+				+0.3
3,950,757	-				+0.9
3,950,798	+				-0.4
3,950,811	-				-0.3
3,950,828	-				+2.0
3,950,844	+				+0.5
3,950,844	+				+1.7
3,950,852	-				-0.6
3,950,853	-				+1.2
3,950,853	-				-0.1
3,950,853	-				-2.4
3,950,859	-				+0.6
3,950,867	+				-0.9
3,950,875	-				+0.3
3,950,940	+				+0.7
3,950,997	+				+1.4
3,950,998	-				-0.8
3,951,005	-				+1.8
3,951,075	+		HP15_3730	0.14	-0.1
3,951,075	+		HP15_3730	0.14	+0.3
3,951,116	+		HP15_3730	0.17	-0.4
3,951,195	+		HP15_3730	0.22	-0.3
3,951,229	+		HP15_3730	0.24	+1.5
3,951,245	-		HP15_3730	0.25	+0.3
3,951,288	-		HP15_3730	0.28	+3.1
3,951,426	+		HP15_3730	0.37	-0.2
3,951,427	+		HP15_3730	0.37	+0.2
3,951,427	+		HP15_3730	0.37	-1.4
3,951,434	-		HP15_3730	0.37	-0.2
3,951,453	-		HP15_3730	0.38	+1.0
3,951,473	+		HP15_3730	0.40	-0.1
3,951,556	-		HP15_3730	0.45	+0.1
3,951,557	+		HP15_3730	0.45	+0.7
3,951,588	+		HP15_3730	0.47	+2.9
3,951,596	-		HP15_3730	0.47	+1.2
3,951,596	-		HP15_3730	0.47	-0.2
3,951,677	+		HP15_3730	0.53	+0.3
3,951,679	+		HP15_3730	0.53	+0.3
3,951,685	-		HP15_3730	0.53	-0.1
3,951,687	-		HP15_3730	0.53	-0.6
3,951,697	-		HP15_3730	0.54	-0.3
3,951,718	-		HP15_3730	0.55	+2.3
3,951,727	-		HP15_3730	0.56	+0.8
3,951,800	+		HP15_3730	0.61	+0.0
3,951,808	-		HP15_3730	0.61	+1.2