Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_362 and HP15_363 are separated by 102 nucleotides HP15_363 and HP15_364 overlap by 4 nucleotides HP15_364 and HP15_365 are separated by 14 nucleotides
HP15_362: HP15_362 - conserved hypothetical protein, secreted, at 362,787 to 365,189
_362
HP15_363: HP15_363 - biotin-protein ligase, at 365,292 to 366,257
_363
HP15_364: HP15_364 - type III pantothenate kinase, at 366,254 to 366,988
_364
HP15_365: HP15_365 - conserved hypothetical protein, at 367,003 to 367,518
_365
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 364.396 kb on + strand, within HP15_362 at 364.404 kb on - strand, within HP15_362 at 364.408 kb on + strand, within HP15_362 at 364.417 kb on + strand, within HP15_362 at 364.417 kb on + strand, within HP15_362 at 364.425 kb on - strand, within HP15_362 at 364.434 kb on + strand, within HP15_362 at 364.435 kb on - strand, within HP15_362 at 364.440 kb on + strand, within HP15_362 at 364.548 kb on - strand, within HP15_362 at 364.616 kb on + strand, within HP15_362 at 364.651 kb on + strand, within HP15_362 at 364.794 kb on + strand, within HP15_362 at 364.854 kb on - strand, within HP15_362 at 365.035 kb on + strand at 365.339 kb on + strand at 365.339 kb on + strand at 365.477 kb on + strand, within HP15_363 at 365.477 kb on + strand, within HP15_363 at 365.485 kb on - strand, within HP15_363 at 366.208 kb on + strand at 366.246 kb on - strand at 367.003 kb on + strand at 367.129 kb on - strand, within HP15_365 at 367.182 kb on - strand, within HP15_365 at 367.222 kb on - strand, within HP15_365
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 364,396 + HP15_362 0.67 +1.2 364,404 - HP15_362 0.67 -1.6 364,408 + HP15_362 0.67 +2.3 364,417 + HP15_362 0.68 +0.1 364,417 + HP15_362 0.68 -1.5 364,425 - HP15_362 0.68 +0.4 364,434 + HP15_362 0.69 -0.7 364,435 - HP15_362 0.69 -0.7 364,440 + HP15_362 0.69 +1.1 364,548 - HP15_362 0.73 +1.0 364,616 + HP15_362 0.76 -1.2 364,651 + HP15_362 0.78 +1.5 364,794 + HP15_362 0.84 -0.5 364,854 - HP15_362 0.86 -1.4 365,035 + -0.4 365,339 + +0.4 365,339 + +0.1 365,477 + HP15_363 0.19 -0.9 365,477 + HP15_363 0.19 -1.2 365,485 - HP15_363 0.20 -0.9 366,208 + -2.8 366,246 - -0.0 367,003 + -0.7 367,129 - HP15_365 0.24 +0.9 367,182 - HP15_365 0.35 +1.3 367,222 - HP15_365 0.42 +0.9
Or see this region's nucleotide sequence