Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_360 and HP15_361 overlap by 4 nucleotides HP15_361 and HP15_362 are separated by 20 nucleotides
HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221
_360
HP15_361: HP15_361 - conserved hypothetical protein, secreted, at 362,218 to 362,766
_361
HP15_362: HP15_362 - conserved hypothetical protein, secreted, at 362,787 to 365,189
_362
Position (kb) 362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 361.220 kb on + strand at 361.246 kb on - strand at 361.290 kb on + strand, within HP15_360 at 361.290 kb on + strand, within HP15_360 at 361.379 kb on + strand, within HP15_360 at 361.463 kb on - strand, within HP15_360 at 361.487 kb on + strand, within HP15_360 at 361.550 kb on + strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.584 kb on - strand, within HP15_360 at 361.591 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.592 kb on + strand, within HP15_360 at 361.609 kb on + strand, within HP15_360 at 361.640 kb on - strand, within HP15_360 at 361.704 kb on - strand, within HP15_360 at 361.709 kb on - strand at 361.713 kb on + strand, within HP15_360 at 362.023 kb on + strand, within HP15_360 at 362.093 kb on + strand, within HP15_360 at 362.202 kb on + strand at 362.202 kb on - strand at 362.215 kb on - strand at 362.237 kb on + strand at 362.332 kb on - strand, within HP15_361 at 362.332 kb on - strand, within HP15_361 at 362.334 kb on + strand, within HP15_361 at 362.334 kb on + strand, within HP15_361 at 362.342 kb on - strand, within HP15_361 at 362.342 kb on - strand, within HP15_361 at 362.381 kb on + strand, within HP15_361 at 362.394 kb on - strand, within HP15_361 at 362.516 kb on + strand, within HP15_361 at 362.579 kb on - strand, within HP15_361 at 362.591 kb on + strand, within HP15_361 at 362.601 kb on + strand, within HP15_361 at 362.601 kb on + strand, within HP15_361 at 362.601 kb on + strand, within HP15_361 at 362.609 kb on - strand, within HP15_361 at 362.609 kb on - strand, within HP15_361 at 362.624 kb on - strand, within HP15_361 at 362.646 kb on + strand, within HP15_361 at 362.664 kb on - strand, within HP15_361 at 362.675 kb on + strand, within HP15_361 at 362.695 kb on - strand, within HP15_361 at 362.776 kb on + strand at 362.776 kb on + strand at 362.776 kb on + strand at 362.784 kb on - strand at 362.784 kb on - strand at 362.802 kb on - strand at 362.832 kb on + strand at 362.854 kb on - strand at 362.855 kb on - strand at 362.889 kb on - strand at 362.890 kb on + strand at 362.941 kb on + strand at 362.966 kb on + strand at 363.030 kb on - strand, within HP15_362 at 363.064 kb on + strand, within HP15_362 at 363.160 kb on + strand, within HP15_362 at 363.346 kb on + strand, within HP15_362 at 363.346 kb on + strand, within HP15_362 at 363.352 kb on + strand, within HP15_362 at 363.352 kb on + strand, within HP15_362 at 363.707 kb on + strand, within HP15_362 at 363.712 kb on + strand, within HP15_362 at 363.717 kb on + strand, within HP15_362 at 363.723 kb on + strand, within HP15_362 at 363.723 kb on + strand, within HP15_362
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 361,220 + +0.3 361,246 - +0.4 361,290 + HP15_360 0.14 +4.1 361,290 + HP15_360 0.14 -1.2 361,379 + HP15_360 0.22 -0.5 361,463 - HP15_360 0.30 +0.2 361,487 + HP15_360 0.32 -0.1 361,550 + HP15_360 0.38 +0.4 361,584 - HP15_360 0.41 +3.5 361,584 - HP15_360 0.41 -0.2 361,591 + HP15_360 0.42 -0.6 361,592 + HP15_360 0.42 +0.4 361,592 + HP15_360 0.42 +0.5 361,592 + HP15_360 0.42 -0.3 361,609 + HP15_360 0.43 +1.4 361,640 - HP15_360 0.46 +0.6 361,704 - HP15_360 0.52 -1.6 361,709 - +0.7 361,713 + HP15_360 0.53 -0.2 362,023 + HP15_360 0.82 -0.5 362,093 + HP15_360 0.88 -0.2 362,202 + +1.0 362,202 - +0.7 362,215 - -2.6 362,237 + +1.0 362,332 - HP15_361 0.21 -0.7 362,332 - HP15_361 0.21 -0.1 362,334 + HP15_361 0.21 -1.0 362,334 + HP15_361 0.21 -2.8 362,342 - HP15_361 0.23 +0.3 362,342 - HP15_361 0.23 +0.5 362,381 + HP15_361 0.30 +0.3 362,394 - HP15_361 0.32 -0.3 362,516 + HP15_361 0.54 +0.3 362,579 - HP15_361 0.66 +1.3 362,591 + HP15_361 0.68 +2.9 362,601 + HP15_361 0.70 -0.0 362,601 + HP15_361 0.70 -1.0 362,601 + HP15_361 0.70 +2.1 362,609 - HP15_361 0.71 -0.7 362,609 - HP15_361 0.71 +0.5 362,624 - HP15_361 0.74 +0.3 362,646 + HP15_361 0.78 +1.5 362,664 - HP15_361 0.81 -1.4 362,675 + HP15_361 0.83 +1.0 362,695 - HP15_361 0.87 +0.0 362,776 + -0.2 362,776 + +1.6 362,776 + -0.4 362,784 - +2.0 362,784 - +0.3 362,802 - -0.6 362,832 + +0.6 362,854 - -0.9 362,855 - -0.7 362,889 - +1.3 362,890 + +1.5 362,941 + +0.2 362,966 + +1.0 363,030 - HP15_362 0.10 +0.3 363,064 + HP15_362 0.12 -1.2 363,160 + HP15_362 0.16 -1.0 363,346 + HP15_362 0.23 +0.9 363,346 + HP15_362 0.23 +0.3 363,352 + HP15_362 0.24 -2.2 363,352 + HP15_362 0.24 +0.3 363,707 + HP15_362 0.38 -0.0 363,712 + HP15_362 0.38 +1.8 363,717 + HP15_362 0.39 +0.8 363,723 + HP15_362 0.39 -0.0 363,723 + HP15_362 0.39 +0.9
Or see this region's nucleotide sequence