Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3402 and HP15_3403 are separated by 234 nucleotides HP15_3403 and HP15_3404 are separated by 240 nucleotides
HP15_3402: HP15_3402 - undecaprenyl pyrophosphate phosphatase, at 3,572,938 to 3,573,735
_3402
HP15_3403: HP15_3403 - UvrD/REP helicase, at 3,573,970 to 3,576,135
_3403
HP15_3404: HP15_3404 - succinic semialdehyde dehydrogenase, at 3,576,376 to 3,577,827
_3404
Position (kb)
3573
3574
3575
3576
3577 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3573.767 kb on + strand at 3573.782 kb on + strand at 3573.829 kb on + strand at 3573.916 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3573.945 kb on + strand at 3574.114 kb on - strand at 3574.116 kb on + strand at 3574.125 kb on - strand at 3574.255 kb on - strand, within HP15_3403 at 3574.315 kb on + strand, within HP15_3403 at 3574.421 kb on - strand, within HP15_3403 at 3574.452 kb on + strand, within HP15_3403 at 3574.452 kb on - strand, within HP15_3403 at 3574.549 kb on - strand, within HP15_3403 at 3574.621 kb on + strand, within HP15_3403 at 3574.621 kb on + strand, within HP15_3403 at 3574.748 kb on + strand, within HP15_3403 at 3574.766 kb on + strand, within HP15_3403 at 3574.777 kb on + strand, within HP15_3403 at 3574.777 kb on + strand, within HP15_3403 at 3574.786 kb on - strand, within HP15_3403 at 3575.048 kb on + strand, within HP15_3403 at 3575.048 kb on + strand, within HP15_3403 at 3575.056 kb on - strand, within HP15_3403 at 3575.236 kb on - strand, within HP15_3403 at 3575.271 kb on + strand, within HP15_3403 at 3575.376 kb on - strand, within HP15_3403 at 3575.380 kb on - strand, within HP15_3403 at 3575.538 kb on + strand, within HP15_3403 at 3575.726 kb on + strand, within HP15_3403 at 3575.799 kb on - strand, within HP15_3403 at 3575.993 kb on + strand at 3575.993 kb on + strand at 3576.111 kb on + strand at 3576.213 kb on + strand at 3576.253 kb on + strand at 3576.253 kb on + strand at 3576.256 kb on + strand at 3576.256 kb on + strand at 3576.266 kb on - strand at 3576.266 kb on - strand at 3576.321 kb on + strand at 3576.321 kb on + strand at 3576.321 kb on + strand at 3576.634 kb on + strand, within HP15_3404 at 3576.634 kb on + strand, within HP15_3404 at 3576.724 kb on + strand, within HP15_3404 at 3576.791 kb on + strand, within HP15_3404 at 3576.866 kb on - strand, within HP15_3404 at 3576.892 kb on - strand, within HP15_3404 at 3577.076 kb on + strand, within HP15_3404 at 3577.084 kb on - strand, within HP15_3404
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 3,573,767 + -0.3 3,573,782 + -0.7 3,573,829 + +1.1 3,573,916 + +0.1 3,573,945 + -2.1 3,573,945 + +0.7 3,573,945 + -0.4 3,573,945 + +1.0 3,573,945 + +0.5 3,573,945 + +0.2 3,574,114 - +0.5 3,574,116 + +0.7 3,574,125 - +0.1 3,574,255 - HP15_3403 0.13 -1.5 3,574,315 + HP15_3403 0.16 -0.6 3,574,421 - HP15_3403 0.21 -0.5 3,574,452 + HP15_3403 0.22 +0.1 3,574,452 - HP15_3403 0.22 -0.9 3,574,549 - HP15_3403 0.27 -1.4 3,574,621 + HP15_3403 0.30 +0.1 3,574,621 + HP15_3403 0.30 +0.9 3,574,748 + HP15_3403 0.36 +0.3 3,574,766 + HP15_3403 0.37 +1.0 3,574,777 + HP15_3403 0.37 -0.8 3,574,777 + HP15_3403 0.37 +2.3 3,574,786 - HP15_3403 0.38 +1.3 3,575,048 + HP15_3403 0.50 +0.0 3,575,048 + HP15_3403 0.50 +2.0 3,575,056 - HP15_3403 0.50 +0.7 3,575,236 - HP15_3403 0.58 -1.6 3,575,271 + HP15_3403 0.60 +0.7 3,575,376 - HP15_3403 0.65 -2.7 3,575,380 - HP15_3403 0.65 +0.5 3,575,538 + HP15_3403 0.72 -1.1 3,575,726 + HP15_3403 0.81 +0.9 3,575,799 - HP15_3403 0.84 +3.3 3,575,993 + +2.3 3,575,993 + +1.3 3,576,111 + -2.2 3,576,213 + -0.6 3,576,253 + +1.9 3,576,253 + -0.2 3,576,256 + -0.2 3,576,256 + -0.2 3,576,266 - -0.2 3,576,266 - -1.2 3,576,321 + -0.3 3,576,321 + -1.4 3,576,321 + +0.5 3,576,634 + HP15_3404 0.18 +1.4 3,576,634 + HP15_3404 0.18 +0.7 3,576,724 + HP15_3404 0.24 -2.2 3,576,791 + HP15_3404 0.29 +0.1 3,576,866 - HP15_3404 0.34 +0.9 3,576,892 - HP15_3404 0.36 -2.4 3,577,076 + HP15_3404 0.48 +0.4 3,577,084 - HP15_3404 0.49 -0.2
Or see this region's nucleotide sequence