Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2935 and HP15_2936 overlap by 4 nucleotides HP15_2936 and HP15_2937 overlap by 4 nucleotides HP15_2937 and HP15_2938 overlap by 4 nucleotides
HP15_2935: HP15_2935 - SpoVR family protein, at 3,076,515 to 3,078,062
_2935
HP15_2936: HP15_2936 - periplasmic sensor signal transduction histidine kinase, at 3,078,059 to 3,079,396
_2936
HP15_2937: HP15_2937 - two component transcriptional regulator, winged helix family, at 3,079,393 to 3,080,064
_2937
HP15_2938: HP15_2938 - propeptide, PepSY amd peptidase M4, at 3,080,061 to 3,080,432
_2938
Position (kb)
3078
3079
3080 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3077.222 kb on + strand, within HP15_2935 at 3077.233 kb on + strand, within HP15_2935 at 3077.241 kb on - strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935 at 3077.496 kb on + strand, within HP15_2935 at 3077.735 kb on + strand, within HP15_2935 at 3077.754 kb on + strand, within HP15_2935 at 3077.787 kb on - strand, within HP15_2935 at 3077.990 kb on - strand at 3077.996 kb on - strand at 3078.082 kb on + strand at 3078.201 kb on + strand, within HP15_2936 at 3078.272 kb on + strand, within HP15_2936 at 3078.428 kb on - strand, within HP15_2936 at 3078.557 kb on + strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3079.023 kb on - strand, within HP15_2936 at 3079.045 kb on + strand, within HP15_2936 at 3079.204 kb on + strand, within HP15_2936 at 3079.237 kb on + strand, within HP15_2936 at 3079.268 kb on + strand at 3079.421 kb on + strand at 3079.523 kb on + strand, within HP15_2937 at 3079.578 kb on + strand, within HP15_2937 at 3079.650 kb on - strand, within HP15_2937 at 3079.704 kb on - strand, within HP15_2937 at 3079.814 kb on - strand, within HP15_2937 at 3079.871 kb on + strand, within HP15_2937 at 3080.312 kb on - strand, within HP15_2938
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 3,077,222 + HP15_2935 0.46 -1.4 3,077,233 + HP15_2935 0.46 -2.2 3,077,241 - HP15_2935 0.47 -0.5 3,077,496 + HP15_2935 0.63 +0.8 3,077,496 + HP15_2935 0.63 -1.3 3,077,735 + HP15_2935 0.79 -0.4 3,077,754 + HP15_2935 0.80 -3.5 3,077,787 - HP15_2935 0.82 -2.2 3,077,990 - -2.6 3,077,996 - -1.7 3,078,082 + -0.1 3,078,201 + HP15_2936 0.11 -0.8 3,078,272 + HP15_2936 0.16 +0.7 3,078,428 - HP15_2936 0.28 -0.1 3,078,557 + HP15_2936 0.37 -0.2 3,078,873 - HP15_2936 0.61 +0.6 3,078,873 - HP15_2936 0.61 -0.0 3,079,023 - HP15_2936 0.72 +0.5 3,079,045 + HP15_2936 0.74 -0.9 3,079,204 + HP15_2936 0.86 -0.3 3,079,237 + HP15_2936 0.88 -0.9 3,079,268 + -0.1 3,079,421 + -0.8 3,079,523 + HP15_2937 0.19 +0.4 3,079,578 + HP15_2937 0.28 +1.0 3,079,650 - HP15_2937 0.38 -0.3 3,079,704 - HP15_2937 0.46 -1.9 3,079,814 - HP15_2937 0.63 -0.9 3,079,871 + HP15_2937 0.71 +0.5 3,080,312 - HP15_2938 0.67 -0.6
Or see this region's nucleotide sequence