Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2713 and HP15_2714 are separated by 54 nucleotides HP15_2714 and HP15_2715 are separated by 76 nucleotides
HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386
_2713
HP15_2714: HP15_2714 - elongation factor P-like protein, at 2,866,441 to 2,867,007
_2714
HP15_2715: HP15_2715 - low specificity L-threonine aldolase, at 2,867,084 to 2,868,115
_2715
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2865.496 kb on + strand, within HP15_2713 at 2865.523 kb on - strand, within HP15_2713 at 2865.567 kb on - strand, within HP15_2713 at 2865.569 kb on + strand, within HP15_2713 at 2865.641 kb on + strand, within HP15_2713 at 2865.649 kb on - strand, within HP15_2713 at 2865.658 kb on + strand, within HP15_2713 at 2865.673 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.678 kb on + strand, within HP15_2713 at 2865.773 kb on - strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.938 kb on + strand, within HP15_2713 at 2865.943 kb on + strand, within HP15_2713 at 2865.948 kb on + strand, within HP15_2713 at 2866.024 kb on + strand, within HP15_2713 at 2866.079 kb on - strand, within HP15_2713 at 2866.089 kb on - strand, within HP15_2713 at 2866.112 kb on - strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.169 kb on + strand, within HP15_2713 at 2866.192 kb on - strand, within HP15_2713 at 2866.386 kb on + strand at 2866.386 kb on + strand at 2866.467 kb on + strand at 2866.475 kb on - strand at 2866.475 kb on - strand at 2866.555 kb on - strand, within HP15_2714 at 2866.611 kb on + strand, within HP15_2714 at 2866.728 kb on - strand, within HP15_2714 at 2866.818 kb on + strand, within HP15_2714 at 2866.836 kb on + strand, within HP15_2714 at 2866.864 kb on + strand, within HP15_2714 at 2866.920 kb on - strand, within HP15_2714 at 2867.088 kb on - strand at 2867.166 kb on - strand at 2867.265 kb on - strand, within HP15_2715 at 2867.503 kb on - strand, within HP15_2715 at 2867.513 kb on + strand, within HP15_2715 at 2867.521 kb on - strand, within HP15_2715 at 2867.593 kb on - strand, within HP15_2715 at 2867.643 kb on + strand, within HP15_2715 at 2867.653 kb on + strand, within HP15_2715 at 2867.661 kb on + strand, within HP15_2715 at 2867.669 kb on - strand, within HP15_2715 at 2867.685 kb on - strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.785 kb on - strand, within HP15_2715 at 2867.868 kb on - strand, within HP15_2715
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,865,496 + HP15_2713 0.23 +1.3 2,865,523 - HP15_2713 0.26 +0.7 2,865,567 - HP15_2713 0.29 -0.4 2,865,569 + HP15_2713 0.29 -1.2 2,865,641 + HP15_2713 0.36 -0.7 2,865,649 - HP15_2713 0.36 +1.4 2,865,658 + HP15_2713 0.37 +0.8 2,865,673 + HP15_2713 0.38 -0.1 2,865,678 + HP15_2713 0.39 +0.6 2,865,678 + HP15_2713 0.39 +1.7 2,865,773 - HP15_2713 0.47 -1.0 2,865,938 + HP15_2713 0.61 +0.8 2,865,938 + HP15_2713 0.61 +0.5 2,865,943 + HP15_2713 0.62 -0.6 2,865,948 + HP15_2713 0.62 -0.4 2,866,024 + HP15_2713 0.69 +0.6 2,866,079 - HP15_2713 0.73 +0.4 2,866,089 - HP15_2713 0.74 +0.4 2,866,112 - HP15_2713 0.76 +0.6 2,866,122 + HP15_2713 0.77 +2.1 2,866,122 + HP15_2713 0.77 +0.5 2,866,169 + HP15_2713 0.81 -0.2 2,866,192 - HP15_2713 0.83 -1.8 2,866,386 + -2.4 2,866,386 + -1.0 2,866,467 + +1.0 2,866,475 - +1.7 2,866,475 - -0.1 2,866,555 - HP15_2714 0.20 -0.9 2,866,611 + HP15_2714 0.30 -0.1 2,866,728 - HP15_2714 0.51 -0.1 2,866,818 + HP15_2714 0.66 +1.1 2,866,836 + HP15_2714 0.70 -0.5 2,866,864 + HP15_2714 0.75 +0.1 2,866,920 - HP15_2714 0.84 -0.9 2,867,088 - +0.0 2,867,166 - -0.7 2,867,265 - HP15_2715 0.18 -0.5 2,867,503 - HP15_2715 0.41 +0.2 2,867,513 + HP15_2715 0.42 -0.8 2,867,521 - HP15_2715 0.42 +0.8 2,867,593 - HP15_2715 0.49 -0.6 2,867,643 + HP15_2715 0.54 -0.8 2,867,653 + HP15_2715 0.55 +0.7 2,867,661 + HP15_2715 0.56 +0.7 2,867,669 - HP15_2715 0.57 -0.2 2,867,685 - HP15_2715 0.58 -1.5 2,867,689 + HP15_2715 0.59 +0.6 2,867,689 + HP15_2715 0.59 +0.8 2,867,785 - HP15_2715 0.68 -1.1 2,867,868 - HP15_2715 0.76 -2.5
Or see this region's nucleotide sequence