Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2648 and HP15_2649 overlap by 14 nucleotides HP15_2649 and HP15_2650 overlap by 4 nucleotides HP15_2650 and HP15_2651 are separated by 105 nucleotides
HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596
_2648
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805
_2650
HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011
_2651
Position (kb)
2800
2801 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.552 kb on - strand at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649 at 2800.120 kb on - strand, within HP15_2649 at 2800.212 kb on + strand, within HP15_2649 at 2800.305 kb on - strand, within HP15_2649 at 2800.600 kb on - strand, within HP15_2650 at 2800.664 kb on + strand, within HP15_2650 at 2800.765 kb on + strand, within HP15_2650 at 2800.773 kb on - strand, within HP15_2650 at 2800.829 kb on - strand at 2800.870 kb on + strand at 2800.918 kb on + strand at 2801.077 kb on - strand, within HP15_2651 at 2801.101 kb on + strand, within HP15_2651 at 2801.188 kb on - strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.234 kb on + strand, within HP15_2651 at 2801.442 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651 at 2801.479 kb on + strand, within HP15_2651 at 2801.614 kb on - strand, within HP15_2651 at 2801.748 kb on + strand, within HP15_2651 at 2801.791 kb on + strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651 at 2801.799 kb on - strand, within HP15_2651
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,799,545 - HP15_2648 0.89 -0.6 2,799,545 - HP15_2648 0.89 +2.4 2,799,545 - HP15_2648 0.89 -1.6 2,799,552 - +0.4 2,799,918 - HP15_2649 0.36 +1.2 2,799,924 - HP15_2649 0.36 +0.7 2,800,014 + HP15_2649 0.46 +0.1 2,800,022 - HP15_2649 0.47 +0.0 2,800,120 - HP15_2649 0.57 -0.6 2,800,212 + HP15_2649 0.67 +0.2 2,800,305 - HP15_2649 0.77 +0.5 2,800,600 - HP15_2650 0.29 +2.0 2,800,664 + HP15_2650 0.51 -4.1 2,800,765 + HP15_2650 0.86 +1.2 2,800,773 - HP15_2650 0.89 -0.5 2,800,829 - +0.4 2,800,870 + +2.1 2,800,918 + -0.6 2,801,077 - HP15_2651 0.15 -0.4 2,801,101 + HP15_2651 0.17 -0.7 2,801,188 - HP15_2651 0.25 +2.1 2,801,234 + HP15_2651 0.29 -0.2 2,801,234 + HP15_2651 0.29 +0.8 2,801,234 + HP15_2651 0.29 -0.3 2,801,234 + HP15_2651 0.29 -1.4 2,801,442 + HP15_2651 0.48 +0.9 2,801,479 + HP15_2651 0.52 -1.5 2,801,479 + HP15_2651 0.52 +1.0 2,801,614 - HP15_2651 0.64 -1.9 2,801,748 + HP15_2651 0.76 +1.3 2,801,791 + HP15_2651 0.80 +0.7 2,801,799 - HP15_2651 0.81 +0.0 2,801,799 - HP15_2651 0.81 -1.3 2,801,799 - HP15_2651 0.81 +0.5
Or see this region's nucleotide sequence