Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2617 and HP15_2618 are separated by 61 nucleotides HP15_2618 and HP15_2619 are separated by 207 nucleotides HP15_2619 and HP15_2620 are separated by 133 nucleotides
HP15_2617: HP15_2617 - conserved hypothetical protein, secreted, at 2,769,300 to 2,769,890
_2617
HP15_2618: HP15_2618 - dodecin flavoprotein, at 2,769,952 to 2,770,152
_2618
HP15_2619: HP15_2619 - conserved hypothetical protein, secreted, at 2,770,360 to 2,771,129
_2619
HP15_2620: HP15_2620 - conserved hypothetical protein, at 2,771,263 to 2,772,579
_2620
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-1
0
1
2 at 2769.387 kb on + strand, within HP15_2617 at 2769.405 kb on - strand, within HP15_2617 at 2769.649 kb on + strand, within HP15_2617 at 2769.707 kb on + strand, within HP15_2617 at 2769.795 kb on - strand, within HP15_2617 at 2770.086 kb on - strand, within HP15_2618 at 2770.088 kb on - strand, within HP15_2618 at 2770.280 kb on + strand at 2770.459 kb on + strand, within HP15_2619 at 2770.563 kb on - strand, within HP15_2619 at 2770.590 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.710 kb on - strand, within HP15_2619 at 2770.834 kb on - strand, within HP15_2619 at 2770.879 kb on - strand, within HP15_2619 at 2770.904 kb on + strand, within HP15_2619 at 2770.943 kb on - strand, within HP15_2619 at 2771.028 kb on - strand, within HP15_2619 at 2771.046 kb on - strand, within HP15_2619 at 2771.172 kb on + strand at 2771.352 kb on + strand at 2771.473 kb on - strand, within HP15_2620 at 2771.524 kb on + strand, within HP15_2620 at 2771.630 kb on + strand, within HP15_2620 at 2771.638 kb on - strand, within HP15_2620 at 2771.668 kb on - strand, within HP15_2620 at 2771.680 kb on + strand, within HP15_2620 at 2771.728 kb on + strand, within HP15_2620 at 2771.756 kb on + strand, within HP15_2620 at 2771.761 kb on + strand, within HP15_2620 at 2771.793 kb on - strand, within HP15_2620 at 2771.914 kb on - strand, within HP15_2620 at 2771.968 kb on - strand, within HP15_2620 at 2772.018 kb on - strand, within HP15_2620
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,769,387 + HP15_2617 0.15 +0.5 2,769,405 - HP15_2617 0.18 +0.2 2,769,649 + HP15_2617 0.59 +1.4 2,769,707 + HP15_2617 0.69 -0.5 2,769,795 - HP15_2617 0.84 -0.7 2,770,086 - HP15_2618 0.67 -0.3 2,770,088 - HP15_2618 0.68 +0.7 2,770,280 + -0.1 2,770,459 + HP15_2619 0.13 -1.3 2,770,563 - HP15_2619 0.26 +0.7 2,770,590 - HP15_2619 0.30 +1.5 2,770,710 - HP15_2619 0.45 -0.3 2,770,710 - HP15_2619 0.45 -0.1 2,770,710 - HP15_2619 0.45 +0.0 2,770,834 - HP15_2619 0.62 -1.7 2,770,879 - HP15_2619 0.67 -0.7 2,770,904 + HP15_2619 0.71 -0.6 2,770,943 - HP15_2619 0.76 +0.6 2,771,028 - HP15_2619 0.87 +0.8 2,771,046 - HP15_2619 0.89 -1.2 2,771,172 + +0.3 2,771,352 + -0.7 2,771,473 - HP15_2620 0.16 -0.3 2,771,524 + HP15_2620 0.20 +0.7 2,771,630 + HP15_2620 0.28 -1.3 2,771,638 - HP15_2620 0.28 +1.6 2,771,668 - HP15_2620 0.31 +1.1 2,771,680 + HP15_2620 0.32 +2.2 2,771,728 + HP15_2620 0.35 +0.6 2,771,756 + HP15_2620 0.37 +0.6 2,771,761 + HP15_2620 0.38 -1.1 2,771,793 - HP15_2620 0.40 +0.8 2,771,914 - HP15_2620 0.49 -0.4 2,771,968 - HP15_2620 0.54 -0.9 2,772,018 - HP15_2620 0.57 +0.7
Or see this region's nucleotide sequence