Strain Fitness in Marinobacter adhaerens HP15 around HP15_2521

Experiment: monoculture; Experiment A, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2519 and HP15_2520 are separated by 101 nucleotidesHP15_2520 and HP15_2521 are separated by 34 nucleotidesHP15_2521 and HP15_2522 are separated by 126 nucleotides HP15_2519: HP15_2519 - DNA topoisomerase IV subunit A, at 2,660,077 to 2,662,386 _2519 HP15_2520: HP15_2520 - hypothetical protein, at 2,662,488 to 2,662,631 _2520 HP15_2521: HP15_2521 - conserved hypothetical protein, membrane, at 2,662,666 to 2,662,908 _2521 HP15_2522: HP15_2522 - methyl-accepting chemotaxis sensory transducer, at 2,663,035 to 2,664,672 _2522 Position (kb) 2662 2663Strain fitness (log2 ratio) -1 0 1 2 3at 2662.546 kb on + strand, within HP15_2520at 2662.554 kb on - strand, within HP15_2520at 2662.595 kb on + strand, within HP15_2520at 2662.609 kb on + strand, within HP15_2520at 2662.621 kb on + strandat 2662.989 kb on + strandat 2663.025 kb on + strandat 2663.127 kb on + strandat 2663.273 kb on - strand, within HP15_2522at 2663.323 kb on + strand, within HP15_2522at 2663.323 kb on + strand, within HP15_2522at 2663.331 kb on - strand, within HP15_2522at 2663.331 kb on - strand, within HP15_2522at 2663.331 kb on - strand, within HP15_2522at 2663.331 kb on - strand, within HP15_2522at 2663.459 kb on + strand, within HP15_2522at 2663.511 kb on - strand, within HP15_2522at 2663.535 kb on + strand, within HP15_2522at 2663.560 kb on + strand, within HP15_2522at 2663.575 kb on + strand, within HP15_2522at 2663.590 kb on - strand, within HP15_2522at 2663.601 kb on - strand, within HP15_2522at 2663.601 kb on - strand, within HP15_2522at 2663.638 kb on + strand, within HP15_2522at 2663.648 kb on + strand, within HP15_2522at 2663.648 kb on + strand, within HP15_2522at 2663.656 kb on - strand, within HP15_2522at 2663.720 kb on + strand, within HP15_2522at 2663.728 kb on - strand, within HP15_2522at 2663.730 kb on + strand, within HP15_2522at 2663.738 kb on - strand, within HP15_2522at 2663.738 kb on - strand, within HP15_2522at 2663.820 kb on + strand, within HP15_2522at 2663.881 kb on + strand, within HP15_2522

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7
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2,662,546 + HP15_2520 0.40 -0.1
2,662,554 - HP15_2520 0.46 +1.3
2,662,595 + HP15_2520 0.74 +1.2
2,662,609 + HP15_2520 0.84 -1.3
2,662,621 + +0.2
2,662,989 + +0.5
2,663,025 + -0.0
2,663,127 + +3.3
2,663,273 - HP15_2522 0.15 +0.8
2,663,323 + HP15_2522 0.18 +0.0
2,663,323 + HP15_2522 0.18 +3.3
2,663,331 - HP15_2522 0.18 +1.0
2,663,331 - HP15_2522 0.18 -1.6
2,663,331 - HP15_2522 0.18 +0.1
2,663,331 - HP15_2522 0.18 +0.2
2,663,459 + HP15_2522 0.26 -0.3
2,663,511 - HP15_2522 0.29 -1.0
2,663,535 + HP15_2522 0.31 -0.3
2,663,560 + HP15_2522 0.32 -1.5
2,663,575 + HP15_2522 0.33 -0.1
2,663,590 - HP15_2522 0.34 -0.1
2,663,601 - HP15_2522 0.35 +0.0
2,663,601 - HP15_2522 0.35 -0.3
2,663,638 + HP15_2522 0.37 -0.7
2,663,648 + HP15_2522 0.37 +0.2
2,663,648 + HP15_2522 0.37 +0.2
2,663,656 - HP15_2522 0.38 +0.5
2,663,720 + HP15_2522 0.42 +0.2
2,663,728 - HP15_2522 0.42 -0.5
2,663,730 + HP15_2522 0.42 -0.9
2,663,738 - HP15_2522 0.43 +0.9
2,663,738 - HP15_2522 0.43 -0.0
2,663,820 + HP15_2522 0.48 -0.0
2,663,881 + HP15_2522 0.52 -0.4

Or see this region's nucleotide sequence