Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2463 and HP15_2464 are separated by 412 nucleotides HP15_2464 and HP15_2465 are separated by 162 nucleotides
HP15_2463: HP15_2463 - sulfate adenylyltransferase, large subunit, at 2,601,752 to 2,603,410
_2463
HP15_2464: HP15_2464 - nucleoid-associated protein NdpA, at 2,603,823 to 2,604,839
_2464
HP15_2465: HP15_2465 - tRNA guanosine-2'-O-methyltransferase, at 2,605,002 to 2,605,739
_2465
Position (kb)
2603
2604
2605 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2602.824 kb on + strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.831 kb on - strand, within HP15_2463 at 2602.856 kb on + strand, within HP15_2463 at 2603.031 kb on + strand, within HP15_2463 at 2603.039 kb on - strand, within HP15_2463 at 2603.157 kb on - strand, within HP15_2463 at 2603.183 kb on - strand, within HP15_2463 at 2603.183 kb on - strand, within HP15_2463 at 2603.191 kb on - strand, within HP15_2463 at 2603.202 kb on - strand, within HP15_2463 at 2603.303 kb on - strand at 2603.418 kb on + strand at 2603.553 kb on + strand at 2603.613 kb on + strand at 2603.621 kb on - strand at 2603.623 kb on + strand at 2603.777 kb on + strand at 2603.779 kb on - strand at 2603.792 kb on - strand at 2603.792 kb on - strand at 2603.792 kb on - strand at 2603.847 kb on + strand at 2603.861 kb on + strand at 2603.931 kb on + strand, within HP15_2464 at 2603.965 kb on - strand, within HP15_2464 at 2604.000 kb on + strand, within HP15_2464 at 2604.110 kb on - strand, within HP15_2464 at 2604.123 kb on - strand, within HP15_2464 at 2604.328 kb on + strand, within HP15_2464 at 2604.432 kb on - strand, within HP15_2464 at 2604.452 kb on - strand, within HP15_2464 at 2604.708 kb on + strand, within HP15_2464 at 2604.726 kb on - strand, within HP15_2464 at 2604.793 kb on - strand at 2604.884 kb on + strand at 2604.884 kb on + strand at 2604.892 kb on - strand at 2605.031 kb on + strand at 2605.091 kb on - strand, within HP15_2465 at 2605.091 kb on - strand, within HP15_2465 at 2605.156 kb on + strand, within HP15_2465 at 2605.258 kb on + strand, within HP15_2465 at 2605.266 kb on - strand, within HP15_2465 at 2605.281 kb on + strand, within HP15_2465 at 2605.373 kb on - strand, within HP15_2465 at 2605.388 kb on + strand, within HP15_2465 at 2605.416 kb on - strand, within HP15_2465 at 2605.446 kb on + strand, within HP15_2465 at 2605.463 kb on + strand, within HP15_2465
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,602,824 + HP15_2463 0.65 -1.9 2,602,831 - HP15_2463 0.65 -4.7 2,602,831 - HP15_2463 0.65 -6.3 2,602,831 - HP15_2463 0.65 -5.4 2,602,856 + HP15_2463 0.67 -5.8 2,603,031 + HP15_2463 0.77 -4.1 2,603,039 - HP15_2463 0.78 -1.2 2,603,157 - HP15_2463 0.85 -3.8 2,603,183 - HP15_2463 0.86 -2.2 2,603,183 - HP15_2463 0.86 -3.6 2,603,191 - HP15_2463 0.87 -2.4 2,603,202 - HP15_2463 0.87 -2.1 2,603,303 - -3.3 2,603,418 + -1.0 2,603,553 + -1.6 2,603,613 + -0.3 2,603,621 - +0.0 2,603,623 + -1.7 2,603,777 + +1.3 2,603,779 - +1.5 2,603,792 - +1.4 2,603,792 - +1.0 2,603,792 - +1.0 2,603,847 + +1.4 2,603,861 + -0.2 2,603,931 + HP15_2464 0.11 -1.6 2,603,965 - HP15_2464 0.14 +0.1 2,604,000 + HP15_2464 0.17 -1.2 2,604,110 - HP15_2464 0.28 -0.9 2,604,123 - HP15_2464 0.29 -1.3 2,604,328 + HP15_2464 0.50 +0.1 2,604,432 - HP15_2464 0.60 +0.9 2,604,452 - HP15_2464 0.62 +1.7 2,604,708 + HP15_2464 0.87 -0.5 2,604,726 - HP15_2464 0.89 -0.2 2,604,793 - +1.3 2,604,884 + +0.4 2,604,884 + -0.4 2,604,892 - -0.5 2,605,031 + -0.5 2,605,091 - HP15_2465 0.12 -1.4 2,605,091 - HP15_2465 0.12 +2.0 2,605,156 + HP15_2465 0.21 -0.9 2,605,258 + HP15_2465 0.35 +0.2 2,605,266 - HP15_2465 0.36 +0.8 2,605,281 + HP15_2465 0.38 -0.4 2,605,373 - HP15_2465 0.50 +0.8 2,605,388 + HP15_2465 0.52 -0.7 2,605,416 - HP15_2465 0.56 -0.2 2,605,446 + HP15_2465 0.60 +0.4 2,605,463 + HP15_2465 0.62 +0.9
Or see this region's nucleotide sequence