Experiment: monoculture; Experiment A, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2238 and HP15_2239 are separated by 110 nucleotides HP15_2239 and HP15_2240 are separated by 121 nucleotides
HP15_2238: HP15_2238 - permease, at 2,359,602 to 2,360,516
_2238
HP15_2239: HP15_2239 - BLUF domain containing protein, at 2,360,627 to 2,361,058
_2239
HP15_2240: HP15_2240 - tRNA-dihydrouridine synthase, TIM-barrel, YjbN, at 2,361,180 to 2,362,214
_2240
Position (kb)
2360
2361
2362 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2359.668 kb on - strand at 2359.726 kb on + strand, within HP15_2238 at 2359.780 kb on - strand, within HP15_2238 at 2359.854 kb on + strand, within HP15_2238 at 2359.929 kb on + strand, within HP15_2238 at 2360.018 kb on - strand, within HP15_2238 at 2360.048 kb on + strand, within HP15_2238 at 2360.251 kb on - strand, within HP15_2238 at 2360.313 kb on + strand, within HP15_2238 at 2360.360 kb on - strand, within HP15_2238 at 2360.380 kb on + strand, within HP15_2238 at 2360.407 kb on - strand, within HP15_2238 at 2360.582 kb on + strand at 2360.648 kb on - strand at 2360.766 kb on + strand, within HP15_2239 at 2361.008 kb on + strand, within HP15_2239 at 2361.008 kb on + strand, within HP15_2239 at 2361.009 kb on + strand, within HP15_2239 at 2361.117 kb on - strand at 2361.140 kb on + strand at 2361.314 kb on + strand, within HP15_2240 at 2361.319 kb on + strand, within HP15_2240 at 2361.322 kb on - strand, within HP15_2240 at 2361.322 kb on - strand, within HP15_2240 at 2361.453 kb on - strand, within HP15_2240 at 2361.540 kb on - strand, within HP15_2240 at 2361.563 kb on + strand, within HP15_2240 at 2361.735 kb on + strand, within HP15_2240 at 2361.744 kb on - strand, within HP15_2240 at 2361.886 kb on + strand, within HP15_2240 at 2361.990 kb on + strand, within HP15_2240 at 2362.033 kb on + strand, within HP15_2240
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 7 remove 2,359,668 - -0.4 2,359,726 + HP15_2238 0.14 -0.1 2,359,780 - HP15_2238 0.19 +1.6 2,359,854 + HP15_2238 0.28 +0.9 2,359,929 + HP15_2238 0.36 -2.6 2,360,018 - HP15_2238 0.45 +1.0 2,360,048 + HP15_2238 0.49 -1.0 2,360,251 - HP15_2238 0.71 -0.1 2,360,313 + HP15_2238 0.78 +0.6 2,360,360 - HP15_2238 0.83 +0.3 2,360,380 + HP15_2238 0.85 +0.0 2,360,407 - HP15_2238 0.88 -2.8 2,360,582 + +0.1 2,360,648 - +0.5 2,360,766 + HP15_2239 0.32 +1.1 2,361,008 + HP15_2239 0.88 +1.7 2,361,008 + HP15_2239 0.88 +0.7 2,361,009 + HP15_2239 0.88 +0.1 2,361,117 - +0.2 2,361,140 + -0.6 2,361,314 + HP15_2240 0.13 -0.0 2,361,319 + HP15_2240 0.13 -1.5 2,361,322 - HP15_2240 0.14 -0.1 2,361,322 - HP15_2240 0.14 -0.6 2,361,453 - HP15_2240 0.26 +0.3 2,361,540 - HP15_2240 0.35 -0.1 2,361,563 + HP15_2240 0.37 -0.0 2,361,735 + HP15_2240 0.54 +0.0 2,361,744 - HP15_2240 0.54 +1.3 2,361,886 + HP15_2240 0.68 -1.0 2,361,990 + HP15_2240 0.78 -0.8 2,362,033 + HP15_2240 0.82 +1.6
Or see this region's nucleotide sequence